HL_4V6X_026

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

4V6X|1|A5|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_026 not in the Motif Atlas

Geometric match to HL_4AOB_002

Geometric discrepancy: 0.3078

The information below is about HL_4AOB_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V6X|1|A5|C|1763
4V6X|1|A5|G|1764
4V6X|1|A5|A|1765
4V6X|1|A5|A|1766
4V6X|1|A5|A|1767
4V6X|1|A5|C|1768
4V6X|1|A5|G|1769

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain Af

40S ribosomal protein S27a