HL_4V6X_027

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

4V6X|1|A5|G|1821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_027 not in the Motif Atlas

Geometric match to HL_5AMQ_001

Geometric discrepancy: 0.2841

The information below is about HL_5AMQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4V6X|1|A5|C|1816
4V6X|1|A5|U|1817
4V6X|1|A5|G|1818
4V6X|1|A5|G|1819
4V6X|1|A5|C|1820
4V6X|1|A5|G|1821
4V6X|1|A5|U|1822
4V6X|1|A5|G|1823

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L5

Chain CT

60S ribosomal protein L21

Chain Cb

60S ribosomal protein L29