HL_4V6X_034

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

4V6X|1|A5|G|2421, 4V6X|1|A5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_034 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2785

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V6X|1|A5|A|2420
4V6X|1|A5|G|2421
4V6X|1|A5|C|2422
4V6X|1|A5|A|2423
4V6X|1|A5|G|2424
4V6X|1|A5|U|2425
4V6X|1|A5|U|2426

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CP

60S ribosomal protein L17

Chain CR

60S ribosomal protein L19