HL_4V6X_037

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

4V6X|1|A5|U|2530, 4V6X|1|A5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_037 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.3073

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6X|1|A5|G|2523
4V6X|1|A5|U|2524
4V6X|1|A5|U|2525
4V6X|1|A5|C|2526
4V6X|1|A5|A|2527
4V6X|1|A5|G|2528
4V6X|1|A5|A|2529
4V6X|1|A5|U|2530
4V6X|1|A5|C|2531
4V6X|1|A5|C|2532

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L19

Chain CX

60S ribosomal protein L23a

Chain Cg

60S ribosomal protein L34