HL_4V6X_046

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V6X|1|A5|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_046 not in the Motif Atlas

Geometric match to HL_1I6U_001

Geometric discrepancy: 0.1582

The information below is about HL_1I6U_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

4V6X|1|A5|C|2872
4V6X|1|A5|U|2873
4V6X|1|A5|U|2874
4V6X|1|A5|C|2875
4V6X|1|A5|G|2876
4V6X|1|A5|G|2877

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain Cn

60S ribosomal protein L41

Chain Cp

60S ribosomal protein L37a