HL_4V6X_049

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

4V6X|1|A5|C|3673

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_049 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.2361

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V6X|1|A5|C|3668
4V6X|1|A5|G|3669
4V6X|1|A5|C|3670
4V6X|1|A5|G|3671
4V6X|1|A5|G|3672
4V6X|1|A5|C|3673
4V6X|1|A5|G|3674

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L8

Chain CN

60S ribosomal protein L15