HL_4V6X_055

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCGCGCC

Length

7 nucleotides

Bulged bases

4V6X|1|A5|C|4144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_055 not in the Motif Atlas

Geometric match to HL_8C3A_221

Geometric discrepancy: 0.3602

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

4V6X|1|A5|G|4139
4V6X|1|A5|C|4140
4V6X|1|A5|G|4141
4V6X|1|A5|C|4142
4V6X|1|A5|G|4143
4V6X|1|A5|C|4144
4V6X|1|A5|C|4145

Current chains

Chain A5

28S ribosomal RNA

Nearby chains