HL_4V6X_058

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_058 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2714

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V6X|1|A5|G|4250
4V6X|1|A5|A|4251
4V6X|1|A5|C|4252
4V6X|1|A5|A|4253
4V6X|1|A5|G|4254
4V6X|1|A5|A|4255
4V6X|1|A5|A|4256
4V6X|1|A5|A|4257
4V6X|1|A5|C|4258

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CJ

60S ribosomal protein L11