HL_4V6X_059

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_059 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1463

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

4V6X|1|A5|C|4270
4V6X|1|A5|A|4271
4V6X|1|A5|G|4272
4V6X|1|A5|A|4273
4V6X|1|A5|A|4274
4V6X|1|A5|G|4275
4V6X|1|A5|G|4276
4V6X|1|A5|G|4277

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CI

60S ribosomal protein L10-like

Chain CT

60S ribosomal protein L21