HL_4V6X_078

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

4V6X|1|A8|C|125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_078 not in the Motif Atlas

Geometric match to HL_3IVK_005

Geometric discrepancy: 0.3582

The information below is about HL_3IVK_005

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

4V6X|1|A8|G|121
4V6X|1|A8|G|122
4V6X|1|A8|U|123
4V6X|1|A8|U|124
4V6X|1|A8|C|125
4V6X|1|A8|C|126
4V6X|1|A8|U|127
4V6X|1|A8|C|128
4V6X|1|A8|C|129

Current chains

Chain A8

5.8S ribosomal RNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CX

60S ribosomal protein L23a