HL_4V6X_083

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCC*G

Length

37 nucleotides

Bulged bases

4V6X|1|B2|C|246, 4V6X|1|B2|C|247, 4V6X|1|B2|C|248, 4V6X|1|B2|C|249, 4V6X|1|B2|U|250, 4V6X|1|B2|C|251, 4V6X|1|B2|U|252, 4V6X|1|B2|C|253, 4V6X|1|B2|C|254, 4V6X|1|B2|G|255, 4V6X|1|B2|G|256, 4V6X|1|B2|C|257, 4V6X|1|B2|C|258, 4V6X|1|B2|C|259, 4V6X|1|B2|C|260, 4V6X|1|B2|G|261, 4V6X|1|B2|G|262, 4V6X|1|B2|C|263, 4V6X|1|B2|C|264, 4V6X|1|B2|G|265, 4V6X|1|B2|G|266, 4V6X|1|B2|G|267, 4V6X|1|B2|G|268, 4V6X|1|B2|G|269, 4V6X|1|B2|G|270, 4V6X|1|B2|C|271, 4V6X|1|B2|G|272, 4V6X|1|B2|G|273, 4V6X|1|B2|G|274, 4V6X|1|B2|C|275, 4V6X|1|B2|G|276, 4V6X|1|B2|C|277, 4V6X|1|B2|C|278

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|B2|C|243
4V6X|1|B2|A|244
4V6X|1|B2|G|279
4V6X|1|B2|C|246
4V6X|1|B2|C|247
4V6X|1|B2|C|248
4V6X|1|B2|C|249
4V6X|1|B2|U|250
4V6X|1|B2|C|251
4V6X|1|B2|U|252
4V6X|1|B2|C|253
4V6X|1|B2|C|254
4V6X|1|B2|G|255
4V6X|1|B2|G|256
4V6X|1|B2|C|257
4V6X|1|B2|C|258
4V6X|1|B2|C|259
4V6X|1|B2|C|260
4V6X|1|B2|G|261
4V6X|1|B2|G|262
4V6X|1|B2|C|263
4V6X|1|B2|C|264
4V6X|1|B2|G|265
4V6X|1|B2|G|266
4V6X|1|B2|G|267
4V6X|1|B2|G|268
4V6X|1|B2|G|269
4V6X|1|B2|G|270
4V6X|1|B2|C|271
4V6X|1|B2|G|272
4V6X|1|B2|G|273
4V6X|1|B2|G|274
4V6X|1|B2|C|275
4V6X|1|B2|G|276
4V6X|1|B2|C|277
4V6X|1|B2|C|278
*
4V6X|1|B2|G|279

Current chains

Chain B2

18S ribosomal RNA

Nearby chains