HL_4V6X_091

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_091 not in the Motif Atlas

Geometric match to HL_4FRG_002

Geometric discrepancy: 0.159

The information below is about HL_4FRG_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V6X|1|B2|C|539
4V6X|1|B2|U|540
4V6X|1|B2|U|541
4V6X|1|B2|U|542
4V6X|1|B2|C|543
4V6X|1|B2|G|544

Current chains

Chain B2

18S ribosomal RNA

Nearby chains