HL_4V6X_094

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

4V6X|1|B2|G|821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_094 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1866

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4V6X|1|B2|U|820
4V6X|1|B2|G|821
4V6X|1|B2|U|822
4V6X|1|B2|U|823
4V6X|1|B2|C|824
4V6X|1|B2|A|825
4V6X|1|B2|A|826
4V6X|1|B2|A|827
4V6X|1|B2|G|828

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AJ

40S ribosomal protein S9

Chain AY

40S ribosomal protein S24