HL_4V6X_095

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

4V6X|1|B2|G|836, 4V6X|1|B2|C|840

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_095 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.5441

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4V6X|1|B2|C|833
4V6X|1|B2|C|834
4V6X|1|B2|C|835
4V6X|1|B2|G|836
4V6X|1|B2|A|837
4V6X|1|B2|G|838
4V6X|1|B2|C|839
4V6X|1|B2|C|840
4V6X|1|B2|G|841

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AJ

40S ribosomal protein S9

Chain AY

40S ribosomal protein S24