HL_4V6X_102

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_102 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.1147

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V6X|1|B2|U|1178
4V6X|1|B2|G|1179
4V6X|1|B2|C|1180
4V6X|1|B2|A|1181
4V6X|1|B2|A|1182
4V6X|1|B2|A|1183

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain Cn

60S ribosomal protein L41

Chain Cp

60S ribosomal protein L37a