HL_4V6X_105

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_105 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.1224

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V6X|1|B2|A|1353
4V6X|1|B2|G|1354
4V6X|1|B2|C|1355
4V6X|1|B2|G|1356
4V6X|1|B2|A|1357
4V6X|1|B2|U|1358

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein SA

Chain AC

40S ribosomal protein S2