HL_4V6X_107

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AGCGGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_107 not in the Motif Atlas

Geometric match to HL_3SUX_002

Geometric discrepancy: 0.1372

The information below is about HL_3SUX_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4V6X|1|B2|A|1421
4V6X|1|B2|G|1422
4V6X|1|B2|C|1423
4V6X|1|B2|G|1424
4V6X|1|B2|G|1425
4V6X|1|B2|U|1426

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AT

40S ribosomal protein S19