HL_4V6X_114

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCCCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_114 not in the Motif Atlas

Homologous match to HL_4TUE_034

Geometric discrepancy: 0.4543

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4V6X|1|BC|G|30
4V6X|1|BC|C|31
4V6X|1|BC|C|32
4V6X|1|BC|C|33
4V6X|1|BC|A|34
4V6X|1|BC|U|35
4V6X|1|BC|A|36
4V6X|1|BC|A|37
4V6X|1|BC|C|38

Current chains

Chain BC

E-tRNA

Nearby chains

Chain AQ

40S ribosomal protein S16

Chain Ah

Plasminogen activator inhibitor 1 RNA-binding protein

Chain B2

Small subunit ribosomal RNA; SSU rRNA