HL_4V6X_118
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CCCGGCGCCCCCCCGGUGUCCCCGCGAGGGGCCCGGGGCGGGGUCCGCCGGCCCUGCG
- Length
- 58 nucleotides
- Bulged bases
- 4V6X|1|A5|C|3978, 4V6X|1|A5|C|3979, 4V6X|1|A5|G|3980, 4V6X|1|A5|G|3981, 4V6X|1|A5|C|3982, 4V6X|1|A5|G|3983, 4V6X|1|A5|C|3984, 4V6X|1|A5|C|3985, 4V6X|1|A5|C|3986, 4V6X|1|A5|C|3987, 4V6X|1|A5|C|3988, 4V6X|1|A5|C|3989, 4V6X|1|A5|C|3990, 4V6X|1|A5|G|3991, 4V6X|1|A5|G|3992, 4V6X|1|A5|U|3993, 4V6X|1|A5|G|3994, 4V6X|1|A5|U|3995, 4V6X|1|A5|C|3996, 4V6X|1|A5|C|3997, 4V6X|1|A5|C|3998, 4V6X|1|A5|C|3999, 4V6X|1|A5|G|4000, 4V6X|1|A5|C|4001, 4V6X|1|A5|G|4002, 4V6X|1|A5|A|4003, 4V6X|1|A5|G|4004, 4V6X|1|A5|G|4005, 4V6X|1|A5|G|4006, 4V6X|1|A5|G|4007, 4V6X|1|A5|C|4008, 4V6X|1|A5|C|4009, 4V6X|1|A5|C|4010, 4V6X|1|A5|G|4011, 4V6X|1|A5|G|4012, 4V6X|1|A5|G|4013, 4V6X|1|A5|G|4014, 4V6X|1|A5|C|4015, 4V6X|1|A5|G|4016, 4V6X|1|A5|G|4017, 4V6X|1|A5|G|4018, 4V6X|1|A5|G|4019, 4V6X|1|A5|U|4020, 4V6X|1|A5|C|4021, 4V6X|1|A5|C|4022, 4V6X|1|A5|G|4023, 4V6X|1|A5|C|4024, 4V6X|1|A5|C|4025, 4V6X|1|A5|G|4026, 4V6X|1|A5|G|4027, 4V6X|1|A5|C|4028, 4V6X|1|A5|C|4029, 4V6X|1|A5|C|4030, 4V6X|1|A5|U|4031, 4V6X|1|A5|G|4032, 4V6X|1|A5|C|4033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6X|1|A5|C|3977
4V6X|1|A5|C|3978
4V6X|1|A5|C|3979
4V6X|1|A5|G|3980
4V6X|1|A5|G|3981
4V6X|1|A5|C|3982
4V6X|1|A5|G|3983
4V6X|1|A5|C|3984
4V6X|1|A5|C|3985
4V6X|1|A5|C|3986
4V6X|1|A5|C|3987
4V6X|1|A5|C|3988
4V6X|1|A5|C|3989
4V6X|1|A5|C|3990
4V6X|1|A5|G|3991
4V6X|1|A5|G|3992
4V6X|1|A5|U|3993
4V6X|1|A5|G|3994
4V6X|1|A5|U|3995
4V6X|1|A5|C|3996
4V6X|1|A5|C|3997
4V6X|1|A5|C|3998
4V6X|1|A5|C|3999
4V6X|1|A5|G|4000
4V6X|1|A5|C|4001
4V6X|1|A5|G|4002
4V6X|1|A5|A|4003
4V6X|1|A5|G|4004
4V6X|1|A5|G|4005
4V6X|1|A5|G|4006
4V6X|1|A5|G|4007
4V6X|1|A5|C|4008
4V6X|1|A5|C|4009
4V6X|1|A5|C|4010
4V6X|1|A5|G|4011
4V6X|1|A5|G|4012
4V6X|1|A5|G|4013
4V6X|1|A5|G|4014
4V6X|1|A5|C|4015
4V6X|1|A5|G|4016
4V6X|1|A5|G|4017
4V6X|1|A5|G|4018
4V6X|1|A5|G|4019
4V6X|1|A5|U|4020
4V6X|1|A5|C|4021
4V6X|1|A5|C|4022
4V6X|1|A5|G|4023
4V6X|1|A5|C|4024
4V6X|1|A5|C|4025
4V6X|1|A5|G|4026
4V6X|1|A5|G|4027
4V6X|1|A5|C|4028
4V6X|1|A5|C|4029
4V6X|1|A5|C|4030
4V6X|1|A5|U|4031
4V6X|1|A5|G|4032
4V6X|1|A5|C|4033
4V6X|1|A5|G|4034
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain Cz
- 60S ribosomal protein L10a
Coloring options: