HL_4V6X_120

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCUCGAUGCUCUUAGCUGAGUGUCCCGCG

Length

29 nucleotides

Bulged bases

4V6X|1|B2|C|759, 4V6X|1|B2|U|760, 4V6X|1|B2|C|761, 4V6X|1|B2|G|762, 4V6X|1|B2|A|763, 4V6X|1|B2|U|764, 4V6X|1|B2|G|765, 4V6X|1|B2|C|766, 4V6X|1|B2|U|767, 4V6X|1|B2|C|768, 4V6X|1|B2|U|769, 4V6X|1|B2|U|770, 4V6X|1|B2|A|771, 4V6X|1|B2|G|772, 4V6X|1|B2|C|773, 4V6X|1|B2|U|774, 4V6X|1|B2|G|775, 4V6X|1|B2|A|776, 4V6X|1|B2|G|777, 4V6X|1|B2|U|778, 4V6X|1|B2|G|779, 4V6X|1|B2|U|780, 4V6X|1|B2|C|781, 4V6X|1|B2|C|782, 4V6X|1|B2|C|783, 4V6X|1|B2|G|784, 4V6X|1|B2|C|785

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|B2|C|758
4V6X|1|B2|C|759
4V6X|1|B2|U|760
4V6X|1|B2|C|761
4V6X|1|B2|G|762
4V6X|1|B2|A|763
4V6X|1|B2|U|764
4V6X|1|B2|G|765
4V6X|1|B2|C|766
4V6X|1|B2|U|767
4V6X|1|B2|C|768
4V6X|1|B2|U|769
4V6X|1|B2|U|770
4V6X|1|B2|A|771
4V6X|1|B2|G|772
4V6X|1|B2|C|773
4V6X|1|B2|U|774
4V6X|1|B2|G|775
4V6X|1|B2|A|776
4V6X|1|B2|G|777
4V6X|1|B2|U|778
4V6X|1|B2|G|779
4V6X|1|B2|U|780
4V6X|1|B2|C|781
4V6X|1|B2|C|782
4V6X|1|B2|C|783
4V6X|1|B2|G|784
4V6X|1|B2|C|785
4V6X|1|B2|G|786

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S6