HL_4V6Y_001

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CAGCUGGGAG

Length

10 nucleotides

Bulged bases

4V6Y|1|A1|C|16, 4V6Y|1|A1|U|17, 4V6Y|1|A1|G|18

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Y_001 not in the Motif Atlas

Homologous match to HL_3KFU_004

Geometric discrepancy: 0.204

The information below is about HL_3KFU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Y|1|A1|C|13
4V6Y|1|A1|A|14
4V6Y|1|A1|G|15
4V6Y|1|A1|C|16
4V6Y|1|A1|U|17
4V6Y|1|A1|G|18
4V6Y|1|A1|G|19
4V6Y|1|A1|G|20
4V6Y|1|A1|A|21
4V6Y|1|A1|G|22

Current chains

Chain A1

fMet-Val-tRNA-Val

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BM

50S ribosomal protein L14