4V6Y Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6Y_001 | No text annotation | ||
| HL_4V6Y_002 | tRNA anticodon loop | ||
| HL_4V6Y_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V6Y_004 | tRNA D-loop | ||
| HL_4V6Y_005 | tRNA anticodon loop | ||
| HL_4V6Y_006 | T-loop with 2 stacked bulged bases | ||
| HL_4V6Y_007 | No text annotation | ||
| HL_4V6Y_008 | Mini UNCG | ||
| HL_4V6Y_009 | GNRA | ||
| HL_4V6Y_010 | GNRA | ||
| HL_4V6Y_011 | No text annotation | ||
| HL_4V6Y_012 | GNRA related | ||
| HL_4V6Y_013 | GNRA | ||
| HL_4V6Y_014 | No text annotation | ||
| HL_4V6Y_015 | UNCG | ||
| HL_4V6Y_016 | GNRA | ||
| HL_4V6Y_017 | UNCG | ||
| HL_4V6Y_018 | No text annotation | ||
| HL_4V6Y_019 | No text annotation | ||
| HL_4V6Y_020 | GNRA-like with tWH | ||
| HL_4V6Y_021 | No text annotation | ||
| HL_4V6Y_022 | GNRA | ||
| HL_4V6Y_023 | No text annotation | ||
| HL_4V6Y_024 | No text annotation | ||
| HL_4V6Y_025 | GNRA | ||
| HL_4V6Y_026 | GNRA | ||
| HL_4V6Y_027 | No text annotation | ||
| HL_4V6Y_028 | GNRA | ||
| HL_4V6Y_029 | UNCG | ||
| HL_4V6Y_030 | GNRA | ||
| HL_4V6Y_031 | T-loop related | ||
| HL_4V6Y_032 | No text annotation | ||
| HL_4V6Y_033 | GNRA | ||
| HL_4V6Y_034 | GNRA | ||
| HL_4V6Y_035 | T-loop with 3 stacked bulged bases | ||
| HL_4V6Y_036 | No text annotation | ||
| HL_4V6Y_037 | UNCG | ||
| HL_4V6Y_038 | GNRA | ||
| HL_4V6Y_039 | Pseudoknot with intercalation | ||
| HL_4V6Y_040 | No text annotation | ||
| HL_4V6Y_041 | No text annotation | ||
| HL_4V6Y_042 | No text annotation | ||
| HL_4V6Y_043 | No text annotation | ||
| HL_4V6Y_044 | No text annotation | ||
| HL_4V6Y_045 | No text annotation | ||
| HL_4V6Y_046 | No text annotation | ||
| HL_4V6Y_047 | T-loop with 2 stacked bulged bases | ||
| HL_4V6Y_048 | No text annotation | ||
| HL_4V6Y_049 | T-loop with unstacked turn | ||
| HL_4V6Y_050 | No text annotation | ||
| HL_4V6Y_051 | Pseudoknot geometry | ||
| HL_4V6Y_052 | GNRA | ||
| HL_4V6Y_053 | GNRA | ||
| HL_4V6Y_054 | No text annotation | ||
| HL_4V6Y_055 | No text annotation | ||
| HL_4V6Y_056 | No text annotation | ||
| HL_4V6Y_057 | GNRA | ||
| HL_4V6Y_058 | GNRA | ||
| HL_4V6Y_059 | No text annotation | ||
| HL_4V6Y_060 | No text annotation | ||
| HL_4V6Y_061 | No text annotation | ||
| HL_4V6Y_062 | No text annotation | ||
| HL_4V6Y_063 | No text annotation | ||
| HL_4V6Y_064 | GNRA | ||
| HL_4V6Y_065 | No text annotation | ||
| HL_4V6Y_066 | No text annotation | ||
| HL_4V6Y_067 | GNRA wlth tandem sheared | ||
| HL_4V6Y_068 | No text annotation | ||
| HL_4V6Y_069 | GNRA | ||
| HL_4V6Y_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V6Y_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6Y_072 | GNRA | ||
| HL_4V6Y_073 | No text annotation | ||
| HL_4V6Y_074 | No text annotation | ||
| HL_4V6Y_075 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6Y_076 | Externally structured | ||
| HL_4V6Y_077 | No text annotation | ||
| HL_4V6Y_078 | No text annotation | ||
| HL_4V6Y_079 | GNRA | ||
| HL_4V6Y_080 | UNCG | ||
| HL_4V6Y_081 | Externally structured | ||
| HL_4V6Y_082 | No text annotation | ||
| HL_4V6Y_083 | No text annotation | ||
| HL_4V6Y_084 | GNRA related | ||
| HL_4V6Y_085 | GNRA | ||
| HL_4V6Y_086 | No text annotation | ||
| HL_4V6Y_087 | No text annotation | ||
| HL_4V6Y_088 | No text annotation | ||
| HL_4V6Y_089 | UNCG | ||
| HL_4V6Y_090 | No text annotation | ||
| HL_4V6Y_091 | No text annotation | ||
| HL_4V6Y_092 | No text annotation | ||
| HL_4V6Y_093 | No text annotation | ||
| HL_4V6Y_094 | No text annotation | ||
| HL_4V6Y_110 | Pseudoknot geometry | ||
| HL_4V6Y_095 | GNRA | ||
| HL_4V6Y_096 | GNRA | ||
| HL_4V6Y_097 | No text annotation | ||
| HL_4V6Y_098 | No text annotation | ||
| HL_4V6Y_099 | No text annotation | ||
| HL_4V6Y_100 | No text annotation | ||
| HL_4V6Y_101 | GNRA | ||
| HL_4V6Y_102 | GNRA | ||
| HL_4V6Y_103 | Ribsomal LSU H95 | ||
| HL_4V6Y_104 | No text annotation | ||
| HL_4V6Y_105 | Externally structured | ||
| HL_4V6Y_106 | No text annotation | ||
| HL_4V6Y_107 | GNRA | ||
| HL_4V6Y_111 | No text annotation | ||
| HL_4V6Y_108 | No text annotation | ||
| HL_4V6Y_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6Y_001 | No text annotation | ||
| IL_4V6Y_002 | No text annotation | ||
| IL_4V6Y_003 | No text annotation | ||
| IL_4V6Y_004 | Single bulged A | ||
| IL_4V6Y_005 | No text annotation | ||
| IL_4V6Y_006 | Single stack bend | ||
| IL_4V6Y_007 | Multiple bulged bases | ||
| IL_4V6Y_008 | Minor groove platform with extra cWW | ||
| IL_4V6Y_009 | Minor groove platform | ||
| IL_4V6Y_010 | No text annotation | ||
| IL_4V6Y_011 | Isolated non-canonical cWW pair | ||
| IL_4V6Y_012 | No text annotation | ||
| IL_4V6Y_013 | Isolated cWH basepair | ||
| IL_4V6Y_014 | tWH-tWH-tHW-tHW | ||
| IL_4V6Y_015 | No text annotation | ||
| IL_4V6Y_016 | Kink-turn with non-sequential stacking | ||
| IL_4V6Y_187 | No text annotation | ||
| IL_4V6Y_017 | No text annotation | ||
| IL_4V6Y_018 | No text annotation | ||
| IL_4V6Y_019 | Single bulged U | ||
| IL_4V6Y_020 | C-loop | ||
| IL_4V6Y_021 | Single bulged G | ||
| IL_4V6Y_022 | No text annotation | ||
| IL_4V6Y_178 | No text annotation | ||
| IL_4V6Y_023 | No text annotation | ||
| IL_4V6Y_024 | tSH-tHW-tWW | ||
| IL_4V6Y_025 | No text annotation | ||
| IL_4V6Y_026 | No text annotation | ||
| IL_4V6Y_027 | SSU/LSU pseudoknot | ||
| IL_4V6Y_028 | Kink-turn related | ||
| IL_4V6Y_029 | No text annotation | ||
| IL_4V6Y_030 | tSH-tHW-tHS | ||
| IL_4V6Y_031 | Isolated non-canonical cWW pair | ||
| IL_4V6Y_032 | Major groove platform | ||
| IL_4V6Y_033 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6Y_188 | No text annotation | ||
| IL_4V6Y_034 | No text annotation | ||
| IL_4V6Y_179 | No text annotation | ||
| IL_4V6Y_035 | Major groove platform; stack outside cWW | ||
| IL_4V6Y_036 | No text annotation | ||
| IL_4V6Y_037 | Tandem non-canonical cWW pairs | ||
| IL_4V6Y_038 | Kink-turn | ||
| IL_4V6Y_039 | Left turn | ||
| IL_4V6Y_040 | tSH-tHW-tHS | ||
| IL_4V6Y_041 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V6Y_042 | Single bulged A | ||
| IL_4V6Y_043 | Single bulged G | ||
| IL_4V6Y_044 | Minor groove platform | ||
| IL_4V6Y_045 | Minor groove platform | ||
| IL_4V6Y_180 | Minor groove platform | ||
| IL_4V6Y_046 | Single stack bend | ||
| IL_4V6Y_047 | Single bulged U | ||
| IL_4V6Y_048 | Isolated cWS basepair | ||
| IL_4V6Y_049 | Minor groove platform | ||
| IL_4V6Y_050 | Single bulged U | ||
| IL_4V6Y_051 | Isolated non-canonical cWW pair | ||
| IL_4V6Y_052 | No text annotation | ||
| IL_4V6Y_053 | Minor groove platform | ||
| IL_4V6Y_054 | No text annotation | ||
| IL_4V6Y_055 | No text annotation | ||
| IL_4V6Y_056 | 180 degree turn | ||
| IL_4V6Y_057 | Double sheared with non-canonical cWW | ||
| IL_4V6Y_058 | No text annotation | ||
| IL_4V6Y_059 | No text annotation | ||
| IL_4V6Y_060 | No text annotation | ||
| IL_4V6Y_061 | Isolated non-canonical cWW pair | ||
| IL_4V6Y_062 | Isolated non-canonical cWW pair | ||
| IL_4V6Y_181 | Isolated non-canonical cWW pair | ||
| IL_4V6Y_063 | Tandem non-canonical cWW pairs | ||
| IL_4V6Y_064 | No text annotation | ||
| IL_4V6Y_065 | No text annotation | ||
| IL_4V6Y_182 | No text annotation | ||
| IL_4V6Y_066 | Single bulged A | ||
| IL_4V6Y_067 | No text annotation | ||
| IL_4V6Y_068 | No text annotation | ||
| IL_4V6Y_069 | Single bulged A | ||
| IL_4V6Y_189 | Minor groove platform | ||
| IL_4V6Y_070 | No text annotation | ||
| IL_4V6Y_071 | No text annotation | ||
| IL_4V6Y_183 | Single stack bend | ||
| IL_4V6Y_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6Y_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V6Y_074 | No text annotation | ||
| IL_4V6Y_075 | No text annotation | ||
| IL_4V6Y_076 | No text annotation | ||
| IL_4V6Y_077 | Isolated non-canonical cWW pair | ||
| IL_4V6Y_078 | No text annotation | ||
| IL_4V6Y_079 | Double sheared | ||
| IL_4V6Y_080 | No text annotation | ||
| IL_4V6Y_081 | AAA cross-strand stack | ||
| IL_4V6Y_082 | Isolated non-canonical cWW pair | ||
| IL_4V6Y_083 | tHW-tHW cross-strand stack | ||
| IL_4V6Y_084 | Single bulged A | ||
| IL_4V6Y_085 | Single bulged G | ||
| IL_4V6Y_086 | Triple sheared | ||
| IL_4V6Y_087 | No text annotation | ||
| IL_4V6Y_088 | Multiple bulged bases | ||
| IL_4V6Y_089 | No text annotation | ||
| IL_4V6Y_090 | No text annotation | ||
| IL_4V6Y_190 | Single stack bend | ||
| IL_4V6Y_091 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6Y_092 | No text annotation | ||
| IL_4V6Y_093 | C-loop | ||
| IL_4V6Y_191 | Isolated non-canonical cWW pair | ||
| IL_4V6Y_094 | Tandem non-canonical cWW pairs | ||
| IL_4V6Y_095 | Double sheared with non-canonical cWW | ||
| IL_4V6Y_096 | Single bulged A | ||
| IL_4V6Y_097 | Single bulged C | ||
| IL_4V6Y_098 | UAA/GAN | ||
| IL_4V6Y_099 | Multiple bulged bases | ||
| IL_4V6Y_100 | Single bulged U | ||
| IL_4V6Y_101 | Kink-turn related | ||
| IL_4V6Y_102 | No text annotation | ||
| IL_4V6Y_103 | Isolated non-canonical cWW pair | ||
| IL_4V6Y_104 | Tandem non-canonical cWW pairs | ||
| IL_4V6Y_105 | Kink-turn | ||
| IL_4V6Y_106 | No text annotation | ||
| IL_4V6Y_107 | No text annotation | ||
| IL_4V6Y_108 | Isolated cWS basepair | ||
| IL_4V6Y_109 | No text annotation | ||
| IL_4V6Y_110 | Kink-turn | ||
| IL_4V6Y_111 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6Y_112 | Major groove minor groove platform with tHH | ||
| IL_4V6Y_113 | UAA/GAN | ||
| IL_4V6Y_114 | tSH-tHW-tHS | ||
| IL_4V6Y_115 | No text annotation | ||
| IL_4V6Y_116 | UAA/GAN | ||
| IL_4V6Y_117 | Tandem non-canonical cWW pairs | ||
| IL_4V6Y_118 | tSH-tHW | ||
| IL_4V6Y_119 | No text annotation | ||
| IL_4V6Y_120 | tSH-tHW-tHS | ||
| IL_4V6Y_121 | 180 degree turn | ||
| IL_4V6Y_122 | Single bulged A | ||
| IL_4V6Y_123 | UAA/GAN variation | ||
| IL_4V6Y_124 | No text annotation | ||
| IL_4V6Y_125 | Isolated tWW turn | ||
| IL_4V6Y_126 | Major groove platform; stack outside cWW | ||
| IL_4V6Y_184 | No text annotation | ||
| IL_4V6Y_127 | Intercalated tWH | ||
| IL_4V6Y_128 | tSH-tSH-tHH-tHS | ||
| IL_4V6Y_129 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6Y_130 | No text annotation | ||
| IL_4V6Y_131 | Single bulged C | ||
| IL_4V6Y_132 | Single bulged A | ||
| IL_4V6Y_133 | Kink-turn related | ||
| IL_4V6Y_134 | Minor groove platform, major groove intercalation | ||
| IL_4V6Y_135 | Major groove intercalation | ||
| IL_4V6Y_136 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6Y_185 | No text annotation | ||
| IL_4V6Y_137 | UAA/GAN related | ||
| IL_4V6Y_138 | Bulged stacked bases | ||
| IL_4V6Y_139 | No text annotation | ||
| IL_4V6Y_140 | Major groove platform | ||
| IL_4V6Y_141 | No text annotation | ||
| IL_4V6Y_142 | No text annotation | ||
| IL_4V6Y_143 | Minor groove platform | ||
| IL_4V6Y_144 | Isolated tHS basepair with bulges | ||
| IL_4V6Y_145 | No text annotation | ||
| IL_4V6Y_192 | Isolated non-canonical cWW pair | ||
| IL_4V6Y_146 | Other IL | ||
| IL_4V6Y_147 | No text annotation | ||
| IL_4V6Y_193 | No text annotation | ||
| IL_4V6Y_148 | Multiple bulged bases | ||
| IL_4V6Y_149 | Isolated cWH basepair | ||
| IL_4V6Y_150 | No text annotation | ||
| IL_4V6Y_186 | No text annotation | ||
| IL_4V6Y_151 | Single bulged U | ||
| IL_4V6Y_152 | Double sheared | ||
| IL_4V6Y_153 | Single bulged U | ||
| IL_4V6Y_154 | Major groove platform | ||
| IL_4V6Y_155 | Major groove platform | ||
| IL_4V6Y_156 | Major groove minor groove platform with extra cWW | ||
| IL_4V6Y_157 | Double sheared with non-canonical cWW | ||
| IL_4V6Y_158 | Major groove platform | ||
| IL_4V6Y_159 | Isolated non-canonical cWW with bulges | ||
| IL_4V6Y_160 | No text annotation | ||
| IL_4V6Y_161 | Major groove platform with intercalation | ||
| IL_4V6Y_162 | Single bulged A | ||
| IL_4V6Y_163 | tSH-tHS-tHW | ||
| IL_4V6Y_164 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V6Y_165 | C-loop | ||
| IL_4V6Y_166 | UAA/GAN related, with intercalation | ||
| IL_4V6Y_167 | Multiple bulged bases | ||
| IL_4V6Y_168 | UAA/GAN with extra cWW | ||
| IL_4V6Y_169 | No text annotation | ||
| IL_4V6Y_170 | Major groove intercalation | ||
| IL_4V6Y_171 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V6Y_172 | No text annotation | ||
| IL_4V6Y_173 | Major groove intercalation | ||
| IL_4V6Y_174 | No text annotation | ||
| IL_4V6Y_175 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6Y_176 | Symmetric double minor groove platform | ||
| IL_4V6Y_177 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6Y_001 | No text annotation | ||
| J3_4V6Y_027 | No text annotation | ||
| J3_4V6Y_028 | No text annotation | ||
| J3_4V6Y_002 | No text annotation | ||
| J3_4V6Y_029 | No text annotation | ||
| J3_4V6Y_030 | No text annotation | ||
| J3_4V6Y_003 | No text annotation | ||
| J3_4V6Y_031 | No text annotation | ||
| J3_4V6Y_004 | No text annotation | ||
| J3_4V6Y_005 | No text annotation | ||
| J3_4V6Y_032 | No text annotation | ||
| J3_4V6Y_006 | No text annotation | ||
| J3_4V6Y_007 | No text annotation | ||
| J3_4V6Y_008 | No text annotation | ||
| J3_4V6Y_009 | No text annotation | ||
| J3_4V6Y_010 | No text annotation | ||
| J3_4V6Y_033 | No text annotation | ||
| J3_4V6Y_011 | No text annotation | ||
| J3_4V6Y_012 | No text annotation | ||
| J3_4V6Y_034 | No text annotation | ||
| J3_4V6Y_035 | No text annotation | ||
| J3_4V6Y_013 | No text annotation | ||
| J3_4V6Y_036 | No text annotation | ||
| J3_4V6Y_014 | No text annotation | ||
| J3_4V6Y_015 | No text annotation | ||
| J3_4V6Y_016 | No text annotation | ||
| J3_4V6Y_017 | No text annotation | ||
| J3_4V6Y_018 | No text annotation | ||
| J3_4V6Y_037 | No text annotation | ||
| J3_4V6Y_038 | No text annotation | ||
| J3_4V6Y_019 | Kink-turn 3-way junction | ||
| J3_4V6Y_039 | No text annotation | ||
| J3_4V6Y_020 | No text annotation | ||
| J3_4V6Y_021 | No text annotation | ||
| J3_4V6Y_022 | No text annotation | ||
| J3_4V6Y_040 | No text annotation | ||
| J3_4V6Y_023 | No text annotation | ||
| J3_4V6Y_024 | No text annotation | ||
| J3_4V6Y_025 | No text annotation | ||
| J3_4V6Y_026 | No text annotation | ||
| J4_4V6Y_001 | tRNA junction | ||
| J4_4V6Y_002 | tRNA junction | ||
| J4_4V6Y_003 | No text annotation | ||
| J4_4V6Y_004 | No text annotation | ||
| J4_4V6Y_005 | No text annotation | ||
| J4_4V6Y_006 | No text annotation | ||
| J4_4V6Y_007 | No text annotation | ||
| J4_4V6Y_008 | No text annotation | ||
| J4_4V6Y_009 | No text annotation | ||
| J4_4V6Y_010 | No text annotation | ||
| J4_4V6Y_011 | No text annotation | ||
| J4_4V6Y_012 | No text annotation | ||
| J4_4V6Y_013 | No text annotation | ||
| J4_4V6Y_014 | No text annotation | ||
| J4_4V6Y_015 | No text annotation | ||
| J4_4V6Y_016 | No text annotation | ||
| J5_4V6Y_001 | No text annotation | ||
| J5_4V6Y_002 | No text annotation | ||
| J5_4V6Y_003 | No text annotation | ||
| J5_4V6Y_004 | No text annotation | ||
| J5_4V6Y_005 | No text annotation | ||
| J5_4V6Y_006 | No text annotation | ||
| J5_4V6Y_007 | No text annotation | ||
| J5_4V6Y_008 | No text annotation | ||
| J5_4V6Y_009 | No text annotation | ||
| J5_4V6Y_010 | No text annotation | ||
| J6_4V6Y_001 | No text annotation | ||
| J6_4V6Y_002 | No text annotation | ||
| J7_4V6Y_001 | No text annotation | ||
| J7_4V6Y_002 | No text annotation |
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