HL_4V6Y_050

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4V6Y|1|BA|G|386, 4V6Y|1|BA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Y_050 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.34

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V6Y|1|BA|A|382
4V6Y|1|BA|C|383
4V6Y|1|BA|A|384
4V6Y|1|BA|C|385
4V6Y|1|BA|G|386
4V6Y|1|BA|U|387
4V6Y|1|BA|G|388
4V6Y|1|BA|G|389
4V6Y|1|BA|U|390
4V6Y|1|BA|A|391
4V6Y|1|BA|U|392

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L25