HL_4V6Y_074

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

4V6Y|1|BA|A|1453, 4V6Y|1|BA|C|1454, 4V6Y|1|BA|G|1459, 4V6Y|1|BA|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Y_074 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.3044

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V6Y|1|BA|G|1450
4V6Y|1|BA|C|1451
4V6Y|1|BA|G|1452
4V6Y|1|BA|A|1453
4V6Y|1|BA|C|1454
4V6Y|1|BA|G|1455
4V6Y|1|BA|G|1456
4V6Y|1|BA|U|1457
4V6Y|1|BA|U|1458
4V6Y|1|BA|G|1459
4V6Y|1|BA|U|1460
4V6Y|1|BA|C|1461

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L15