HL_4V6Y_106

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

4V6Y|1|BA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6Y_106 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.3213

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V6Y|1|BA|G|2819
4V6Y|1|BA|A|2820
4V6Y|1|BA|A|2821
4V6Y|1|BA|G|2822
4V6Y|1|BA|A|2823
4V6Y|1|BA|C|2824
4V6Y|1|BA|G|2825
4V6Y|1|BA|A|2826
4V6Y|1|BA|C|2827

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L29

Chain BD

50S ribosomal protein L36

Chain BN

50S ribosomal protein L15