HL_4V70_035

3D structure

PDB id

4V70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V70_035 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.3224

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V70|1|AA|C|1314
4V70|1|AA|U|1315
4V70|1|AA|G|1316
4V70|1|AA|C|1317
4V70|1|AA|A|1318
4V70|1|AA|A|1319
4V70|1|AA|C|1320
4V70|1|AA|U|1321
4V70|1|AA|C|1322
4V70|1|AA|G|1323

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AN

30S ribosomal protein S14

Chain AS

30S ribosomal protein S19