4V70 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V70_001 | No text annotation | ||
| HL_4V70_002 | tRNA anticodon loop | ||
| HL_4V70_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V70_004 | No text annotation | ||
| HL_4V70_005 | No text annotation | ||
| HL_4V70_006 | T-loop with 2 stacked bulged bases | ||
| HL_4V70_007 | No text annotation | ||
| HL_4V70_008 | No text annotation | ||
| HL_4V70_112 | Mini UNCG | ||
| HL_4V70_009 | No text annotation | ||
| HL_4V70_010 | GNRA | ||
| HL_4V70_011 | UNCG | ||
| HL_4V70_012 | GNRA related | ||
| HL_4V70_013 | GNRA | ||
| HL_4V70_014 | No text annotation | ||
| HL_4V70_015 | No text annotation | ||
| HL_4V70_016 | No text annotation | ||
| HL_4V70_017 | UNCG | ||
| HL_4V70_018 | No text annotation | ||
| HL_4V70_019 | Externally structured | ||
| HL_4V70_020 | GNRA-like with tWH | ||
| HL_4V70_021 | No text annotation | ||
| HL_4V70_022 | GNRA | ||
| HL_4V70_023 | No text annotation | ||
| HL_4V70_024 | No text annotation | ||
| HL_4V70_025 | GNRA | ||
| HL_4V70_026 | GNRA | ||
| HL_4V70_027 | No text annotation | ||
| HL_4V70_028 | GNRA | ||
| HL_4V70_029 | No text annotation | ||
| HL_4V70_030 | GNRA | ||
| HL_4V70_031 | T-loop related | ||
| HL_4V70_032 | No text annotation | ||
| HL_4V70_033 | GNRA | ||
| HL_4V70_034 | No text annotation | ||
| HL_4V70_035 | T-loop with 3 stacked bulged bases | ||
| HL_4V70_036 | No text annotation | ||
| HL_4V70_037 | UNCG | ||
| HL_4V70_038 | GNRA | ||
| HL_4V70_039 | Pseudoknot geometry | ||
| HL_4V70_040 | No text annotation | ||
| HL_4V70_041 | No text annotation | ||
| HL_4V70_042 | No text annotation | ||
| HL_4V70_043 | No text annotation | ||
| HL_4V70_044 | No text annotation | ||
| HL_4V70_045 | No text annotation | ||
| HL_4V70_046 | No text annotation | ||
| HL_4V70_047 | T-loop with 2 stacked bulged bases | ||
| HL_4V70_048 | No text annotation | ||
| HL_4V70_049 | T-loop with unstacked turn | ||
| HL_4V70_050 | No text annotation | ||
| HL_4V70_051 | No text annotation | ||
| HL_4V70_052 | GNRA | ||
| HL_4V70_053 | GNRA | ||
| HL_4V70_054 | No text annotation | ||
| HL_4V70_055 | No text annotation | ||
| HL_4V70_113 | T-loop with 2 stacked bulged bases | ||
| HL_4V70_056 | No text annotation | ||
| HL_4V70_057 | GNRA | ||
| HL_4V70_058 | No text annotation | ||
| HL_4V70_059 | No text annotation | ||
| HL_4V70_060 | No text annotation | ||
| HL_4V70_061 | UNCG variation | ||
| HL_4V70_062 | No text annotation | ||
| HL_4V70_063 | No text annotation | ||
| HL_4V70_064 | GNRA | ||
| HL_4V70_065 | No text annotation | ||
| HL_4V70_066 | No text annotation | ||
| HL_4V70_067 | No text annotation | ||
| HL_4V70_068 | No text annotation | ||
| HL_4V70_069 | GNRA | ||
| HL_4V70_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V70_071 | No text annotation | ||
| HL_4V70_114 | Pseudoknot geometry with 3' bulge | ||
| HL_4V70_072 | GNRA | ||
| HL_4V70_073 | No text annotation | ||
| HL_4V70_074 | No text annotation | ||
| HL_4V70_075 | Pseudoknot geometry with 3' bulge | ||
| HL_4V70_076 | No text annotation | ||
| HL_4V70_077 | No text annotation | ||
| HL_4V70_078 | No text annotation | ||
| HL_4V70_079 | GNRA | ||
| HL_4V70_080 | UNCG | ||
| HL_4V70_081 | No text annotation | ||
| HL_4V70_082 | No text annotation | ||
| HL_4V70_083 | No text annotation | ||
| HL_4V70_084 | GNRA related | ||
| HL_4V70_085 | No text annotation | ||
| HL_4V70_086 | No text annotation | ||
| HL_4V70_087 | No text annotation | ||
| HL_4V70_088 | No text annotation | ||
| HL_4V70_089 | UNCG | ||
| HL_4V70_090 | No text annotation | ||
| HL_4V70_091 | No text annotation | ||
| HL_4V70_092 | No text annotation | ||
| HL_4V70_093 | No text annotation | ||
| HL_4V70_094 | No text annotation | ||
| HL_4V70_110 | Pseudoknot geometry | ||
| HL_4V70_095 | GNRA | ||
| HL_4V70_096 | GNRA | ||
| HL_4V70_097 | No text annotation | ||
| HL_4V70_098 | No text annotation | ||
| HL_4V70_099 | No text annotation | ||
| HL_4V70_100 | No text annotation | ||
| HL_4V70_101 | GNRA | ||
| HL_4V70_102 | GNRA | ||
| HL_4V70_103 | No text annotation | ||
| HL_4V70_104 | No text annotation | ||
| HL_4V70_105 | Mini UNCG | ||
| HL_4V70_106 | No text annotation | ||
| HL_4V70_107 | GNRA | ||
| HL_4V70_111 | No text annotation | ||
| HL_4V70_108 | No text annotation | ||
| HL_4V70_109 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V70_001 | Single bulged G | ||
| IL_4V70_002 | Single bulged A | ||
| IL_4V70_003 | No text annotation | ||
| IL_4V70_004 | Minor groove platform | ||
| IL_4V70_005 | Multiple bulged bases | ||
| IL_4V70_006 | Minor groove platform with extra cWW | ||
| IL_4V70_007 | Minor groove platform | ||
| IL_4V70_008 | No text annotation | ||
| IL_4V70_009 | Isolated non-canonical cWW pair | ||
| IL_4V70_010 | No text annotation | ||
| IL_4V70_011 | Isolated cWH basepair | ||
| IL_4V70_012 | tWH-tWH-tHW-tHW | ||
| IL_4V70_172 | Isolated non-canonical cWW pair | ||
| IL_4V70_013 | No text annotation | ||
| IL_4V70_185 | No text annotation | ||
| IL_4V70_014 | No text annotation | ||
| IL_4V70_015 | No text annotation | ||
| IL_4V70_016 | No text annotation | ||
| IL_4V70_186 | C-loop | ||
| IL_4V70_017 | Single bulged U | ||
| IL_4V70_187 | C-loop | ||
| IL_4V70_018 | C-loop with extra cWW pair | ||
| IL_4V70_188 | Single bulged G | ||
| IL_4V70_019 | No text annotation | ||
| IL_4V70_020 | No text annotation | ||
| IL_4V70_021 | No text annotation | ||
| IL_4V70_022 | No text annotation | ||
| IL_4V70_023 | No text annotation | ||
| IL_4V70_173 | No text annotation | ||
| IL_4V70_024 | Single bulged A | ||
| IL_4V70_025 | SSU/LSU pseudoknot | ||
| IL_4V70_026 | Kink-turn related | ||
| IL_4V70_027 | No text annotation | ||
| IL_4V70_028 | tSH-tHW-tHS | ||
| IL_4V70_029 | Major groove platform | ||
| IL_4V70_030 | Major groove minor groove platform; mini C-loop | ||
| IL_4V70_031 | No text annotation | ||
| IL_4V70_032 | Major groove platform; stack outside cWW | ||
| IL_4V70_033 | Single stack bend | ||
| IL_4V70_034 | Tandem non-canonical cWW pairs | ||
| IL_4V70_035 | Kink-turn | ||
| IL_4V70_036 | Left turn | ||
| IL_4V70_037 | tSH-tHW-tHS | ||
| IL_4V70_038 | Isolated non-canonical cWW pair | ||
| IL_4V70_174 | Isolated non-canonical cWW pair | ||
| IL_4V70_039 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V70_040 | No text annotation | ||
| IL_4V70_041 | No text annotation | ||
| IL_4V70_042 | Minor groove platform | ||
| IL_4V70_189 | No text annotation | ||
| IL_4V70_043 | Isolated non-canonical cWW with bulges | ||
| IL_4V70_044 | No text annotation | ||
| IL_4V70_175 | Single bulged U | ||
| IL_4V70_045 | Major groove platform with intercalation | ||
| IL_4V70_176 | Isolated cWS basepair | ||
| IL_4V70_046 | Minor groove platform | ||
| IL_4V70_047 | Single bulged U | ||
| IL_4V70_048 | Isolated non-canonical cWW pair | ||
| IL_4V70_049 | No text annotation | ||
| IL_4V70_050 | Minor groove platform | ||
| IL_4V70_051 | No text annotation | ||
| IL_4V70_052 | No text annotation | ||
| IL_4V70_053 | 180 degree turn | ||
| IL_4V70_054 | Double sheared with non-canonical cWW | ||
| IL_4V70_055 | No text annotation | ||
| IL_4V70_056 | No text annotation | ||
| IL_4V70_057 | No text annotation | ||
| IL_4V70_058 | Isolated non-canonical cWW pair | ||
| IL_4V70_059 | Isolated non-canonical cWW pair | ||
| IL_4V70_060 | Isolated non-canonical cWW pair | ||
| IL_4V70_061 | Double sheared | ||
| IL_4V70_062 | No text annotation | ||
| IL_4V70_177 | Isolated non-canonical cWW pair | ||
| IL_4V70_063 | Major groove platform with extra cWW | ||
| IL_4V70_064 | No text annotation | ||
| IL_4V70_190 | No text annotation | ||
| IL_4V70_065 | Triple sheared with non-canonical cWW | ||
| IL_4V70_066 | Isolated cWS basepair | ||
| IL_4V70_067 | Minor groove platform | ||
| IL_4V70_068 | No text annotation | ||
| IL_4V70_069 | Single stack bend | ||
| IL_4V70_070 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V70_071 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V70_072 | No text annotation | ||
| IL_4V70_073 | No text annotation | ||
| IL_4V70_074 | No text annotation | ||
| IL_4V70_075 | No text annotation | ||
| IL_4V70_076 | Double sheared | ||
| IL_4V70_191 | Isolated non-canonical cWW pair | ||
| IL_4V70_077 | AAA cross-strand stack | ||
| IL_4V70_078 | Isolated non-canonical cWW pair | ||
| IL_4V70_079 | tHW-tHW cross-strand stack | ||
| IL_4V70_080 | Single bulged A | ||
| IL_4V70_081 | Quadruple sheared | ||
| IL_4V70_082 | Major groove platform | ||
| IL_4V70_083 | Multiple bulged bases | ||
| IL_4V70_084 | No text annotation | ||
| IL_4V70_085 | No text annotation | ||
| IL_4V70_192 | Single stack bend | ||
| IL_4V70_086 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V70_087 | Single bulged G | ||
| IL_4V70_088 | C-loop with bulged stacked A's | ||
| IL_4V70_089 | Isolated cWS basepair | ||
| IL_4V70_090 | Double sheared with non-canonical cWW | ||
| IL_4V70_091 | Single bulged A | ||
| IL_4V70_193 | Single bulged C | ||
| IL_4V70_092 | No text annotation | ||
| IL_4V70_194 | No text annotation | ||
| IL_4V70_093 | Multiple bulged bases | ||
| IL_4V70_094 | Single bulged U | ||
| IL_4V70_095 | Kink-turn related | ||
| IL_4V70_096 | No text annotation | ||
| IL_4V70_097 | Isolated non-canonical cWW pair | ||
| IL_4V70_098 | Tandem non-canonical cWW pairs | ||
| IL_4V70_099 | Kink-turn | ||
| IL_4V70_100 | No text annotation | ||
| IL_4V70_101 | Isolated cWS basepair | ||
| IL_4V70_102 | No text annotation | ||
| IL_4V70_103 | Kink-turn | ||
| IL_4V70_104 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V70_105 | Major groove platform; stack outside cWW | ||
| IL_4V70_106 | C-loop | ||
| IL_4V70_107 | UAA/GAN | ||
| IL_4V70_108 | tSH-tHW-tHS | ||
| IL_4V70_109 | No text annotation | ||
| IL_4V70_110 | UAA/GAN | ||
| IL_4V70_111 | No text annotation | ||
| IL_4V70_112 | No text annotation | ||
| IL_4V70_113 | No text annotation | ||
| IL_4V70_114 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V70_178 | tSH-tHW-tHS | ||
| IL_4V70_115 | 180 degree turn | ||
| IL_4V70_116 | Single bulged A | ||
| IL_4V70_117 | UAA/GAN variation | ||
| IL_4V70_118 | No text annotation | ||
| IL_4V70_119 | Isolated tWW turn | ||
| IL_4V70_120 | Major groove platform; stack outside cWW | ||
| IL_4V70_179 | No text annotation | ||
| IL_4V70_121 | Intercalated tWH | ||
| IL_4V70_122 | tSH-tSH-tHH-tHS | ||
| IL_4V70_123 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V70_124 | Triple sheared with non-canonical cWW | ||
| IL_4V70_125 | Single bulged C | ||
| IL_4V70_126 | Single bulged A | ||
| IL_4V70_127 | Kink-turn related | ||
| IL_4V70_128 | Minor groove platform, major groove intercalation | ||
| IL_4V70_129 | Major groove intercalation | ||
| IL_4V70_130 | Minor groove platform | ||
| IL_4V70_180 | No text annotation | ||
| IL_4V70_195 | No text annotation | ||
| IL_4V70_131 | UAA/GAN related | ||
| IL_4V70_132 | Isolated cWS basepair | ||
| IL_4V70_133 | Multiple bulged bases | ||
| IL_4V70_181 | No text annotation | ||
| IL_4V70_134 | No text annotation | ||
| IL_4V70_135 | Major groove platform | ||
| IL_4V70_136 | No text annotation | ||
| IL_4V70_137 | Single bulged U | ||
| IL_4V70_138 | Minor groove platform | ||
| IL_4V70_139 | Isolated tHS basepair with bulges | ||
| IL_4V70_140 | Isolated non-canonical cWW pair | ||
| IL_4V70_196 | Other IL | ||
| IL_4V70_141 | Other IL | ||
| IL_4V70_142 | No text annotation | ||
| IL_4V70_143 | No text annotation | ||
| IL_4V70_144 | No text annotation | ||
| IL_4V70_145 | No text annotation | ||
| IL_4V70_146 | Single bulged U | ||
| IL_4V70_147 | Double sheared | ||
| IL_4V70_148 | Major groove platform | ||
| IL_4V70_149 | Major groove platform | ||
| IL_4V70_150 | Major groove minor groove platform with extra cWW | ||
| IL_4V70_151 | Double sheared with non-canonical cWW | ||
| IL_4V70_152 | Major groove platform | ||
| IL_4V70_153 | Isolated non-canonical cWW with bulges | ||
| IL_4V70_154 | Multiple bulged bases | ||
| IL_4V70_155 | Major groove platform with intercalation | ||
| IL_4V70_156 | Single bulged A | ||
| IL_4V70_157 | tSH-tHS-tHW | ||
| IL_4V70_158 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V70_197 | C-loop | ||
| IL_4V70_159 | C-loop with extra cWW pair | ||
| IL_4V70_160 | UAA/GAN related, with intercalation | ||
| IL_4V70_161 | Multiple bulged bases | ||
| IL_4V70_162 | UAA/GAN with extra cWW | ||
| IL_4V70_182 | Isolated non-canonical cWW pair | ||
| IL_4V70_163 | No text annotation | ||
| IL_4V70_164 | Major groove intercalation | ||
| IL_4V70_183 | No text annotation | ||
| IL_4V70_165 | No text annotation | ||
| IL_4V70_184 | tHS double platform | ||
| IL_4V70_166 | No text annotation | ||
| IL_4V70_167 | Major groove intercalation | ||
| IL_4V70_168 | No text annotation | ||
| IL_4V70_169 | Major groove minor groove platform; mini C-loop | ||
| IL_4V70_170 | Symmetric double minor groove platform | ||
| IL_4V70_171 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V70_001 | No text annotation | ||
| J3_4V70_026 | No text annotation | ||
| J3_4V70_002 | No text annotation | ||
| J3_4V70_027 | No text annotation | ||
| J3_4V70_028 | No text annotation | ||
| J3_4V70_003 | No text annotation | ||
| J3_4V70_040 | No text annotation | ||
| J3_4V70_029 | No text annotation | ||
| J3_4V70_004 | No text annotation | ||
| J3_4V70_030 | No text annotation | ||
| J3_4V70_031 | No text annotation | ||
| J3_4V70_032 | No text annotation | ||
| J3_4V70_005 | No text annotation | ||
| J3_4V70_006 | No text annotation | ||
| J3_4V70_041 | No text annotation | ||
| J3_4V70_007 | No text annotation | ||
| J3_4V70_008 | No text annotation | ||
| J3_4V70_033 | No text annotation | ||
| J3_4V70_009 | No text annotation | ||
| J3_4V70_010 | No text annotation | ||
| J3_4V70_034 | No text annotation | ||
| J3_4V70_035 | No text annotation | ||
| J3_4V70_011 | No text annotation | ||
| J3_4V70_036 | No text annotation | ||
| J3_4V70_012 | No text annotation | ||
| J3_4V70_013 | No text annotation | ||
| J3_4V70_014 | No text annotation | ||
| J3_4V70_015 | No text annotation | ||
| J3_4V70_016 | No text annotation | ||
| J3_4V70_017 | No text annotation | ||
| J3_4V70_037 | No text annotation | ||
| J3_4V70_018 | Kink-turn 3-way junction | ||
| J3_4V70_038 | No text annotation | ||
| J3_4V70_019 | No text annotation | ||
| J3_4V70_020 | No text annotation | ||
| J3_4V70_039 | No text annotation | ||
| J3_4V70_021 | No text annotation | ||
| J3_4V70_022 | No text annotation | ||
| J3_4V70_023 | No text annotation | ||
| J3_4V70_024 | No text annotation | ||
| J3_4V70_025 | No text annotation | ||
| J4_4V70_001 | tRNA junction | ||
| J4_4V70_016 | tRNA junction | ||
| J4_4V70_002 | No text annotation | ||
| J4_4V70_003 | No text annotation | ||
| J4_4V70_004 | No text annotation | ||
| J4_4V70_005 | No text annotation | ||
| J4_4V70_006 | No text annotation | ||
| J4_4V70_007 | No text annotation | ||
| J4_4V70_008 | No text annotation | ||
| J4_4V70_009 | No text annotation | ||
| J4_4V70_010 | No text annotation | ||
| J4_4V70_011 | No text annotation | ||
| J4_4V70_012 | No text annotation | ||
| J4_4V70_013 | No text annotation | ||
| J4_4V70_014 | No text annotation | ||
| J4_4V70_017 | No text annotation | ||
| J4_4V70_015 | No text annotation | ||
| J5_4V70_001 | No text annotation | ||
| J5_4V70_002 | No text annotation | ||
| J5_4V70_003 | No text annotation | ||
| J5_4V70_004 | No text annotation | ||
| J5_4V70_005 | No text annotation | ||
| J5_4V70_006 | No text annotation | ||
| J5_4V70_007 | No text annotation | ||
| J5_4V70_008 | No text annotation | ||
| J5_4V70_009 | No text annotation | ||
| J5_4V70_010 | No text annotation | ||
| J6_4V70_001 | No text annotation | ||
| J6_4V70_002 | No text annotation | ||
| J7_4V70_001 | No text annotation | ||
| J7_4V70_002 | No text annotation |
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