HL_4V72_006

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

G(5MU)(PSU)CAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V72_006 not in the Motif Atlas

Homologous match to HL_4V8N_145

Geometric discrepancy: 0.3433

The information below is about HL_4V8N_145

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V72|1|A3|G|54
4V72|1|A3|5MU|55
4V72|1|A3|PSU|56
4V72|1|A3|C|57
4V72|1|A3|A|58
4V72|1|A3|A|59
4V72|1|A3|A|60
4V72|1|A3|U|61
4V72|1|A3|C|62

Current chains

Chain A3

tRNA-fMet

Nearby chains

Chain B5

50S ribosomal protein L1

Chain BA

Large subunit ribosomal RNA; LSU rRNA