4V72 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V72_001 | No text annotation | ||
| HL_4V72_002 | tRNA anticodon loop | ||
| HL_4V72_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V72_004 | No text annotation | ||
| HL_4V72_005 | No text annotation | ||
| HL_4V72_112 | No text annotation | ||
| HL_4V72_006 | T-loop with 2 stacked bulged bases | ||
| HL_4V72_007 | No text annotation | ||
| HL_4V72_008 | No text annotation | ||
| HL_4V72_009 | GNRA | ||
| HL_4V72_010 | GNRA | ||
| HL_4V72_011 | No text annotation | ||
| HL_4V72_012 | No text annotation | ||
| HL_4V72_013 | GNRA | ||
| HL_4V72_014 | No text annotation | ||
| HL_4V72_113 | No text annotation | ||
| HL_4V72_015 | No text annotation | ||
| HL_4V72_114 | No text annotation | ||
| HL_4V72_016 | GNRA variation | ||
| HL_4V72_017 | UNCG | ||
| HL_4V72_018 | No text annotation | ||
| HL_4V72_019 | No text annotation | ||
| HL_4V72_020 | GNRA-like with tWH | ||
| HL_4V72_021 | No text annotation | ||
| HL_4V72_022 | GNRA | ||
| HL_4V72_023 | No text annotation | ||
| HL_4V72_024 | No text annotation | ||
| HL_4V72_025 | GNRA | ||
| HL_4V72_026 | GNRA | ||
| HL_4V72_027 | No text annotation | ||
| HL_4V72_028 | GNRA | ||
| HL_4V72_029 | No text annotation | ||
| HL_4V72_030 | GNRA | ||
| HL_4V72_031 | T-loop related | ||
| HL_4V72_032 | No text annotation | ||
| HL_4V72_033 | GNRA | ||
| HL_4V72_034 | GNRA | ||
| HL_4V72_035 | T-loop with 3 stacked bulged bases | ||
| HL_4V72_036 | No text annotation | ||
| HL_4V72_037 | UNCG | ||
| HL_4V72_038 | GNRA | ||
| HL_4V72_039 | No text annotation | ||
| HL_4V72_040 | No text annotation | ||
| HL_4V72_041 | No text annotation | ||
| HL_4V72_042 | UNCG | ||
| HL_4V72_043 | No text annotation | ||
| HL_4V72_044 | No text annotation | ||
| HL_4V72_045 | No text annotation | ||
| HL_4V72_046 | No text annotation | ||
| HL_4V72_047 | T-loop with 2 stacked bulged bases | ||
| HL_4V72_048 | No text annotation | ||
| HL_4V72_049 | T-loop with unstacked turn | ||
| HL_4V72_050 | No text annotation | ||
| HL_4V72_051 | No text annotation | ||
| HL_4V72_052 | GNRA | ||
| HL_4V72_053 | GNRA | ||
| HL_4V72_054 | tRNA D-loop | ||
| HL_4V72_055 | Externally structured | ||
| HL_4V72_056 | No text annotation | ||
| HL_4V72_057 | GNRA | ||
| HL_4V72_058 | GNRA | ||
| HL_4V72_059 | GNRA with extra cWW | ||
| HL_4V72_060 | No text annotation | ||
| HL_4V72_061 | UNCG variation | ||
| HL_4V72_062 | No text annotation | ||
| HL_4V72_063 | No text annotation | ||
| HL_4V72_064 | GNRA | ||
| HL_4V72_065 | No text annotation | ||
| HL_4V72_066 | No text annotation | ||
| HL_4V72_067 | No text annotation | ||
| HL_4V72_068 | No text annotation | ||
| HL_4V72_069 | GNRA | ||
| HL_4V72_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V72_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V72_072 | GNRA | ||
| HL_4V72_073 | No text annotation | ||
| HL_4V72_074 | No text annotation | ||
| HL_4V72_075 | Pseudoknot geometry with 3' bulge | ||
| HL_4V72_076 | No text annotation | ||
| HL_4V72_077 | Mini UNCG | ||
| HL_4V72_078 | No text annotation | ||
| HL_4V72_079 | GNRA | ||
| HL_4V72_080 | UNCG | ||
| HL_4V72_081 | Mini UNCG | ||
| HL_4V72_082 | No text annotation | ||
| HL_4V72_110 | No text annotation | ||
| HL_4V72_083 | No text annotation | ||
| HL_4V72_084 | GNRA related | ||
| HL_4V72_085 | No text annotation | ||
| HL_4V72_086 | No text annotation | ||
| HL_4V72_087 | No text annotation | ||
| HL_4V72_088 | No text annotation | ||
| HL_4V72_089 | UNCG | ||
| HL_4V72_090 | No text annotation | ||
| HL_4V72_091 | No text annotation | ||
| HL_4V72_092 | No text annotation | ||
| HL_4V72_093 | No text annotation | ||
| HL_4V72_094 | No text annotation | ||
| HL_4V72_095 | GNRA | ||
| HL_4V72_096 | GNRA | ||
| HL_4V72_097 | No text annotation | ||
| HL_4V72_098 | No text annotation | ||
| HL_4V72_099 | No text annotation | ||
| HL_4V72_100 | No text annotation | ||
| HL_4V72_101 | GNRA | ||
| HL_4V72_102 | GNRA | ||
| HL_4V72_103 | Ribsomal LSU H95 | ||
| HL_4V72_104 | No text annotation | ||
| HL_4V72_105 | Mini UNCG | ||
| HL_4V72_106 | No text annotation | ||
| HL_4V72_107 | GNRA | ||
| HL_4V72_111 | No text annotation | ||
| HL_4V72_108 | No text annotation | ||
| HL_4V72_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V72_001 | Single bulged G | ||
| IL_4V72_180 | Single bulged A | ||
| IL_4V72_002 | Isolated non-canonical cWW with bulges | ||
| IL_4V72_003 | No text annotation | ||
| IL_4V72_004 | Minor groove platform | ||
| IL_4V72_005 | Multiple bulged bases | ||
| IL_4V72_006 | Minor groove platform with extra cWW | ||
| IL_4V72_007 | Minor groove platform | ||
| IL_4V72_196 | Single bulged G | ||
| IL_4V72_008 | Single bulged G, near cWW | ||
| IL_4V72_009 | Isolated non-canonical cWW pair | ||
| IL_4V72_010 | Minor groove platform related | ||
| IL_4V72_011 | Isolated cWH basepair | ||
| IL_4V72_012 | tWH-tWH-tHW-tHW | ||
| IL_4V72_013 | No text annotation | ||
| IL_4V72_014 | Kink-turn with non-sequential stacking | ||
| IL_4V72_197 | No text annotation | ||
| IL_4V72_015 | No text annotation | ||
| IL_4V72_016 | No text annotation | ||
| IL_4V72_017 | No text annotation | ||
| IL_4V72_198 | Single bulged U | ||
| IL_4V72_018 | C-loop | ||
| IL_4V72_019 | Single bulged G | ||
| IL_4V72_020 | No text annotation | ||
| IL_4V72_021 | No text annotation | ||
| IL_4V72_022 | tSH-tHW-tWW | ||
| IL_4V72_023 | No text annotation | ||
| IL_4V72_024 | No text annotation | ||
| IL_4V72_199 | No text annotation | ||
| IL_4V72_025 | Single bulged A | ||
| IL_4V72_026 | SSU/LSU pseudoknot | ||
| IL_4V72_027 | Kink-turn related | ||
| IL_4V72_181 | tSH-tHW-tHS | ||
| IL_4V72_028 | No text annotation | ||
| IL_4V72_182 | Isolated cWS basepair | ||
| IL_4V72_029 | Major groove platform | ||
| IL_4V72_030 | Minor groove platform | ||
| IL_4V72_031 | No text annotation | ||
| IL_4V72_032 | Major groove platform; stack outside cWW | ||
| IL_4V72_033 | No text annotation | ||
| IL_4V72_183 | No text annotation | ||
| IL_4V72_034 | No text annotation | ||
| IL_4V72_035 | No text annotation | ||
| IL_4V72_036 | No text annotation | ||
| IL_4V72_037 | Left turn | ||
| IL_4V72_038 | tSH-tHW-tHS | ||
| IL_4V72_039 | No text annotation | ||
| IL_4V72_184 | Isolated non-canonical cWW pair | ||
| IL_4V72_040 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V72_041 | Single bulged A | ||
| IL_4V72_042 | Single bulged G | ||
| IL_4V72_043 | No text annotation | ||
| IL_4V72_044 | No text annotation | ||
| IL_4V72_045 | Minor groove platform | ||
| IL_4V72_046 | No text annotation | ||
| IL_4V72_200 | Single stack bend | ||
| IL_4V72_047 | Single bulged U | ||
| IL_4V72_048 | Tandem non-canonical cWW pairs | ||
| IL_4V72_185 | No text annotation | ||
| IL_4V72_049 | Minor groove platform | ||
| IL_4V72_050 | No text annotation | ||
| IL_4V72_201 | Single bulged U | ||
| IL_4V72_051 | Isolated non-canonical cWW pair | ||
| IL_4V72_052 | No text annotation | ||
| IL_4V72_053 | Minor groove platform | ||
| IL_4V72_054 | No text annotation | ||
| IL_4V72_055 | No text annotation | ||
| IL_4V72_056 | 180 degree turn | ||
| IL_4V72_057 | Double sheared with non-canonical cWW | ||
| IL_4V72_202 | No text annotation | ||
| IL_4V72_058 | No text annotation | ||
| IL_4V72_059 | No text annotation | ||
| IL_4V72_060 | No text annotation | ||
| IL_4V72_061 | Isolated non-canonical cWW pair | ||
| IL_4V72_062 | Isolated non-canonical cWW pair | ||
| IL_4V72_063 | Tandem non-canonical cWW pairs | ||
| IL_4V72_064 | Double sheared | ||
| IL_4V72_186 | No text annotation | ||
| IL_4V72_203 | No text annotation | ||
| IL_4V72_065 | No text annotation | ||
| IL_4V72_204 | Single bulged A | ||
| IL_4V72_066 | No text annotation | ||
| IL_4V72_187 | No text annotation | ||
| IL_4V72_067 | Triple sheared with non-canonical cWW | ||
| IL_4V72_068 | Single bulged A | ||
| IL_4V72_069 | Minor groove platform | ||
| IL_4V72_070 | No text annotation | ||
| IL_4V72_071 | Single stack bend | ||
| IL_4V72_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V72_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V72_074 | No text annotation | ||
| IL_4V72_075 | No text annotation | ||
| IL_4V72_076 | No text annotation | ||
| IL_4V72_077 | No text annotation | ||
| IL_4V72_078 | Double sheared | ||
| IL_4V72_079 | No text annotation | ||
| IL_4V72_080 | AAA cross-strand stack | ||
| IL_4V72_081 | No text annotation | ||
| IL_4V72_082 | tHW-tHW cross-strand stack | ||
| IL_4V72_083 | Single bulged A | ||
| IL_4V72_084 | Single bulged G | ||
| IL_4V72_085 | Triple sheared | ||
| IL_4V72_086 | Major groove platform with extra pair | ||
| IL_4V72_087 | Multiple bulged bases | ||
| IL_4V72_088 | No text annotation | ||
| IL_4V72_188 | No text annotation | ||
| IL_4V72_089 | No text annotation | ||
| IL_4V72_205 | Single stack bend | ||
| IL_4V72_090 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V72_091 | Single bulged G | ||
| IL_4V72_092 | C-loop with bulged stacked A's | ||
| IL_4V72_093 | No text annotation | ||
| IL_4V72_094 | Double sheared with non-canonical cWW | ||
| IL_4V72_095 | No text annotation | ||
| IL_4V72_096 | Single bulged C | ||
| IL_4V72_097 | UAA/GAN | ||
| IL_4V72_098 | SSU/LSU pseudoknot | ||
| IL_4V72_099 | Single bulged U | ||
| IL_4V72_100 | Kink-turn related | ||
| IL_4V72_101 | No text annotation | ||
| IL_4V72_102 | Isolated non-canonical cWW pair | ||
| IL_4V72_103 | Tandem non-canonical cWW pairs | ||
| IL_4V72_104 | Kink-turn | ||
| IL_4V72_105 | No text annotation | ||
| IL_4V72_106 | Major groove platform | ||
| IL_4V72_107 | Isolated cWS basepair | ||
| IL_4V72_108 | No text annotation | ||
| IL_4V72_109 | Kink-turn | ||
| IL_4V72_110 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V72_189 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4V72_111 | Major groove platform; stack outside cWW | ||
| IL_4V72_112 | Major groove minor groove platform with tHH | ||
| IL_4V72_113 | UAA/GAN | ||
| IL_4V72_114 | tSH-tHW-tHS | ||
| IL_4V72_115 | No text annotation | ||
| IL_4V72_116 | UAA/GAN | ||
| IL_4V72_117 | Tandem non-canonical cWW pairs | ||
| IL_4V72_118 | No text annotation | ||
| IL_4V72_119 | No text annotation | ||
| IL_4V72_120 | tSH-tHW-tHS | ||
| IL_4V72_121 | 180 degree turn | ||
| IL_4V72_122 | Single bulged A | ||
| IL_4V72_123 | UAA/GAN variation | ||
| IL_4V72_124 | No text annotation | ||
| IL_4V72_125 | Isolated tWW turn | ||
| IL_4V72_126 | Major groove platform; stack outside cWW | ||
| IL_4V72_190 | No text annotation | ||
| IL_4V72_127 | Intercalated tWH | ||
| IL_4V72_128 | tSH-tSH-tHH-tHS | ||
| IL_4V72_129 | No text annotation | ||
| IL_4V72_206 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V72_130 | Triple sheared | ||
| IL_4V72_131 | Single bulged C | ||
| IL_4V72_132 | Single bulged A | ||
| IL_4V72_133 | Kink-turn related | ||
| IL_4V72_134 | Minor groove platform, major groove intercalation | ||
| IL_4V72_135 | Major groove intercalation | ||
| IL_4V72_136 | Major groove minor groove platform; mini C-loop | ||
| IL_4V72_191 | No text annotation | ||
| IL_4V72_137 | UAA/GAN related | ||
| IL_4V72_138 | Bulged stacked bases | ||
| IL_4V72_139 | No text annotation | ||
| IL_4V72_192 | Tandem non-canonical cWW pairs | ||
| IL_4V72_207 | Isolated non-canonical cWW pair | ||
| IL_4V72_140 | Major groove platform | ||
| IL_4V72_141 | No text annotation | ||
| IL_4V72_142 | Single bulged U | ||
| IL_4V72_143 | Minor groove platform | ||
| IL_4V72_144 | Isolated tHS basepair with bulges | ||
| IL_4V72_145 | Isolated non-canonical cWW pair | ||
| IL_4V72_208 | Isolated cWH basepair | ||
| IL_4V72_146 | Other IL | ||
| IL_4V72_147 | No text annotation | ||
| IL_4V72_148 | Multiple bulged bases | ||
| IL_4V72_149 | No text annotation | ||
| IL_4V72_150 | No text annotation | ||
| IL_4V72_193 | No text annotation | ||
| IL_4V72_151 | Single bulged U | ||
| IL_4V72_152 | Double sheared | ||
| IL_4V72_194 | Isolated non-canonical cWW pair | ||
| IL_4V72_153 | Tandem non-canonical cWW pairs | ||
| IL_4V72_154 | No text annotation | ||
| IL_4V72_155 | Major groove platform | ||
| IL_4V72_156 | Major groove platform | ||
| IL_4V72_157 | Major groove minor groove platform with extra cWW | ||
| IL_4V72_158 | Double sheared with non-canonical cWW | ||
| IL_4V72_159 | Major groove platform | ||
| IL_4V72_160 | Isolated non-canonical cWW with bulges | ||
| IL_4V72_161 | Isolated non-canonical cWW contact | ||
| IL_4V72_162 | Major groove platform with intercalation | ||
| IL_4V72_195 | Isolated non-canonical cWW pair | ||
| IL_4V72_163 | Single bulged A | ||
| IL_4V72_164 | tSH-tHS-tHW | ||
| IL_4V72_165 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V72_166 | No text annotation | ||
| IL_4V72_209 | C-loop | ||
| IL_4V72_167 | UAA/GAN related, with intercalation | ||
| IL_4V72_168 | Multiple bulged bases | ||
| IL_4V72_169 | UAA/GAN with extra cWW | ||
| IL_4V72_170 | No text annotation | ||
| IL_4V72_171 | Major groove intercalation | ||
| IL_4V72_172 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V72_173 | No text annotation | ||
| IL_4V72_174 | Isolated non-canonical cWW pair | ||
| IL_4V72_175 | Major groove intercalation | ||
| IL_4V72_176 | No text annotation | ||
| IL_4V72_177 | Major groove minor groove platform; mini C-loop | ||
| IL_4V72_178 | Symmetric double minor groove platform | ||
| IL_4V72_179 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V72_001 | No text annotation | ||
| J3_4V72_037 | No text annotation | ||
| J3_4V72_027 | No text annotation | ||
| J3_4V72_002 | No text annotation | ||
| J3_4V72_028 | No text annotation | ||
| J3_4V72_003 | No text annotation | ||
| J3_4V72_004 | No text annotation | ||
| J3_4V72_029 | No text annotation | ||
| J3_4V72_005 | No text annotation | ||
| J3_4V72_006 | No text annotation | ||
| J3_4V72_007 | No text annotation | ||
| J3_4V72_030 | No text annotation | ||
| J3_4V72_008 | No text annotation | ||
| J3_4V72_009 | No text annotation | ||
| J3_4V72_010 | No text annotation | ||
| J3_4V72_011 | No text annotation | ||
| J3_4V72_031 | No text annotation | ||
| J3_4V72_012 | No text annotation | ||
| J3_4V72_013 | No text annotation | ||
| J3_4V72_032 | No text annotation | ||
| J3_4V72_033 | No text annotation | ||
| J3_4V72_014 | No text annotation | ||
| J3_4V72_034 | No text annotation | ||
| J3_4V72_015 | No text annotation | ||
| J3_4V72_016 | No text annotation | ||
| J3_4V72_017 | No text annotation | ||
| J3_4V72_018 | No text annotation | ||
| J3_4V72_019 | No text annotation | ||
| J3_4V72_020 | No text annotation | ||
| J3_4V72_035 | No text annotation | ||
| J3_4V72_021 | Kink-turn 3-way junction | ||
| J3_4V72_036 | No text annotation | ||
| J3_4V72_022 | No text annotation | ||
| J3_4V72_023 | No text annotation | ||
| J3_4V72_024 | No text annotation | ||
| J3_4V72_025 | No text annotation | ||
| J3_4V72_026 | No text annotation | ||
| J4_4V72_001 | tRNA junction | ||
| J4_4V72_002 | tRNA junction | ||
| J4_4V72_003 | No text annotation | ||
| J4_4V72_004 | No text annotation | ||
| J4_4V72_005 | No text annotation | ||
| J4_4V72_006 | No text annotation | ||
| J4_4V72_007 | No text annotation | ||
| J4_4V72_008 | No text annotation | ||
| J4_4V72_009 | No text annotation | ||
| J4_4V72_010 | No text annotation | ||
| J4_4V72_011 | No text annotation | ||
| J4_4V72_012 | No text annotation | ||
| J4_4V72_013 | No text annotation | ||
| J4_4V72_014 | No text annotation | ||
| J4_4V72_015 | No text annotation | ||
| J4_4V72_016 | No text annotation | ||
| J5_4V72_001 | No text annotation | ||
| J5_4V72_002 | No text annotation | ||
| J5_4V72_003 | No text annotation | ||
| J5_4V72_004 | No text annotation | ||
| J5_4V72_005 | No text annotation | ||
| J5_4V72_006 | No text annotation | ||
| J5_4V72_007 | No text annotation | ||
| J5_4V72_008 | No text annotation | ||
| J5_4V72_009 | No text annotation | ||
| J5_4V72_012 | No text annotation | ||
| J5_4V72_010 | No text annotation | ||
| J5_4V72_011 | No text annotation | ||
| J6_4V72_001 | No text annotation | ||
| J6_4V72_002 | No text annotation | ||
| J7_4V72_001 | No text annotation | ||
| J7_4V72_002 | No text annotation |
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