HL_4V72_088

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V72|1|BA|A|2030, 4V72|1|BA|A|2031, 4V72|1|BA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V72_088 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.3509

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

4V72|1|BA|G|2027
4V72|1|BA|U|2028
4V72|1|BA|G|2029
4V72|1|BA|A|2030
4V72|1|BA|A|2031
4V72|1|BA|G|2032
4V72|1|BA|A|2033
4V72|1|BA|U|2034
4V72|1|BA|G|2035
4V72|1|BA|C|2036

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3