HL_4V76_001

3D structure

PDB id

4V76 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CAGCUGGGAG

Length

10 nucleotides

Bulged bases

4V76|1|A1|C|16, 4V76|1|A1|G|18

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V76_001 not in the Motif Atlas

Homologous match to HL_5AXM_001

Geometric discrepancy: 0.5521

The information below is about HL_5AXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V76|1|A1|C|13
4V76|1|A1|A|14
4V76|1|A1|G|15
4V76|1|A1|C|16
4V76|1|A1|U|17
4V76|1|A1|G|18
4V76|1|A1|G|19
4V76|1|A1|G|20
4V76|1|A1|A|21
4V76|1|A1|G|22

Current chains

Chain A1

fMet-Val-tRNA-Val

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5