4V76 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V76_001 | tRNA D-loop | ||
| HL_4V76_002 | tRNA anticodon loop | ||
| HL_4V76_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V76_004 | No text annotation | ||
| HL_4V76_005 | No text annotation | ||
| HL_4V76_006 | T-loop with 2 stacked bulged bases | ||
| HL_4V76_007 | No text annotation | ||
| HL_4V76_008 | No text annotation | ||
| HL_4V76_009 | GNRA | ||
| HL_4V76_010 | No text annotation | ||
| HL_4V76_011 | UNCG | ||
| HL_4V76_012 | GNRA related | ||
| HL_4V76_013 | GNRA | ||
| HL_4V76_014 | No text annotation | ||
| HL_4V76_015 | UNCG | ||
| HL_4V76_016 | No text annotation | ||
| HL_4V76_017 | UNCG | ||
| HL_4V76_110 | No text annotation | ||
| HL_4V76_018 | No text annotation | ||
| HL_4V76_019 | GNRA | ||
| HL_4V76_020 | GNRA-like with tWH | ||
| HL_4V76_021 | No text annotation | ||
| HL_4V76_022 | GNRA | ||
| HL_4V76_023 | No text annotation | ||
| HL_4V76_024 | Externally structured | ||
| HL_4V76_025 | GNRA | ||
| HL_4V76_026 | GNRA | ||
| HL_4V76_027 | No text annotation | ||
| HL_4V76_028 | GNRA | ||
| HL_4V76_029 | No text annotation | ||
| HL_4V76_030 | GNRA | ||
| HL_4V76_031 | T-loop related | ||
| HL_4V76_032 | No text annotation | ||
| HL_4V76_033 | GNRA | ||
| HL_4V76_034 | No text annotation | ||
| HL_4V76_035 | T-loop with 3 stacked bulged bases | ||
| HL_4V76_036 | No text annotation | ||
| HL_4V76_037 | UNCG | ||
| HL_4V76_038 | No text annotation | ||
| HL_4V76_039 | Pseudoknot with intercalation | ||
| HL_4V76_040 | No text annotation | ||
| HL_4V76_041 | No text annotation | ||
| HL_4V76_042 | No text annotation | ||
| HL_4V76_043 | No text annotation | ||
| HL_4V76_044 | No text annotation | ||
| HL_4V76_045 | No text annotation | ||
| HL_4V76_046 | No text annotation | ||
| HL_4V76_047 | T-loop with 2 stacked bulged bases | ||
| HL_4V76_048 | No text annotation | ||
| HL_4V76_049 | T-loop with unstacked turn | ||
| HL_4V76_050 | No text annotation | ||
| HL_4V76_051 | No text annotation | ||
| HL_4V76_052 | GNRA | ||
| HL_4V76_053 | GNRA | ||
| HL_4V76_054 | No text annotation | ||
| HL_4V76_055 | T-loop with 2 stacked bulged bases | ||
| HL_4V76_056 | No text annotation | ||
| HL_4V76_057 | GNRA | ||
| HL_4V76_058 | No text annotation | ||
| HL_4V76_059 | GNRA wlth tandem sheared | ||
| HL_4V76_060 | No text annotation | ||
| HL_4V76_061 | No text annotation | ||
| HL_4V76_062 | No text annotation | ||
| HL_4V76_063 | No text annotation | ||
| HL_4V76_064 | No text annotation | ||
| HL_4V76_065 | No text annotation | ||
| HL_4V76_066 | No text annotation | ||
| HL_4V76_067 | No text annotation | ||
| HL_4V76_068 | No text annotation | ||
| HL_4V76_069 | GNRA | ||
| HL_4V76_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V76_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V76_072 | GNRA | ||
| HL_4V76_073 | No text annotation | ||
| HL_4V76_074 | No text annotation | ||
| HL_4V76_075 | Pseudoknot geometry with 3' bulge | ||
| HL_4V76_076 | Mini UNCG | ||
| HL_4V76_077 | Mini UNCG | ||
| HL_4V76_078 | No text annotation | ||
| HL_4V76_079 | GNRA | ||
| HL_4V76_080 | No text annotation | ||
| HL_4V76_081 | No text annotation | ||
| HL_4V76_082 | No text annotation | ||
| HL_4V76_083 | No text annotation | ||
| HL_4V76_084 | No text annotation | ||
| HL_4V76_085 | UNCG variation | ||
| HL_4V76_086 | No text annotation | ||
| HL_4V76_087 | No text annotation | ||
| HL_4V76_088 | No text annotation | ||
| HL_4V76_089 | No text annotation | ||
| HL_4V76_090 | No text annotation | ||
| HL_4V76_091 | No text annotation | ||
| HL_4V76_092 | No text annotation | ||
| HL_4V76_093 | No text annotation | ||
| HL_4V76_094 | Pseudoknot geometry | ||
| HL_4V76_095 | GNRA | ||
| HL_4V76_096 | GNRA | ||
| HL_4V76_097 | No text annotation | ||
| HL_4V76_111 | No text annotation | ||
| HL_4V76_098 | No text annotation | ||
| HL_4V76_099 | No text annotation | ||
| HL_4V76_112 | GNRA variation | ||
| HL_4V76_100 | No text annotation | ||
| HL_4V76_101 | GNRA | ||
| HL_4V76_102 | GNRA | ||
| HL_4V76_103 | Ribsomal LSU H95 | ||
| HL_4V76_104 | No text annotation | ||
| HL_4V76_105 | UNCG variation | ||
| HL_4V76_114 | No text annotation | ||
| HL_4V76_106 | No text annotation | ||
| HL_4V76_107 | GNRA | ||
| HL_4V76_113 | No text annotation | ||
| HL_4V76_108 | No text annotation | ||
| HL_4V76_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V76_177 | No text annotation | ||
| IL_4V76_001 | Single bulged G | ||
| IL_4V76_002 | Single bulged A | ||
| IL_4V76_003 | No text annotation | ||
| IL_4V76_004 | Minor groove platform | ||
| IL_4V76_005 | Multiple bulged bases | ||
| IL_4V76_006 | Minor groove platform with extra cWW | ||
| IL_4V76_007 | Minor groove platform | ||
| IL_4V76_008 | Major groove intercalation | ||
| IL_4V76_009 | Isolated non-canonical cWW pair | ||
| IL_4V76_010 | No text annotation | ||
| IL_4V76_011 | Isolated cWH basepair | ||
| IL_4V76_012 | tWH-tWH-tHW-tHW | ||
| IL_4V76_013 | Minor groove platform | ||
| IL_4V76_014 | Kink-turn with non-sequential stacking | ||
| IL_4V76_015 | No text annotation | ||
| IL_4V76_016 | C-loop | ||
| IL_4V76_017 | Single bulged U | ||
| IL_4V76_194 | C-loop | ||
| IL_4V76_018 | C-loop with extra cWW pair | ||
| IL_4V76_195 | Single bulged G | ||
| IL_4V76_178 | No text annotation | ||
| IL_4V76_019 | No text annotation | ||
| IL_4V76_020 | No text annotation | ||
| IL_4V76_021 | tSH-tHW-tWW | ||
| IL_4V76_022 | No text annotation | ||
| IL_4V76_023 | SSU/LSU pseudoknot | ||
| IL_4V76_024 | Kink-turn related | ||
| IL_4V76_025 | No text annotation | ||
| IL_4V76_026 | tSH-tHW-tHS | ||
| IL_4V76_027 | No text annotation | ||
| IL_4V76_028 | No text annotation | ||
| IL_4V76_029 | Major groove platform; stack outside cWW | ||
| IL_4V76_030 | Single stack bend | ||
| IL_4V76_031 | Tandem non-canonical cWW pairs | ||
| IL_4V76_032 | No text annotation | ||
| IL_4V76_033 | Kink-turn | ||
| IL_4V76_034 | Left turn | ||
| IL_4V76_035 | tSH-tHW-tHS | ||
| IL_4V76_196 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V76_036 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_4V76_037 | Isolated non-canonical cWW pair | ||
| IL_4V76_197 | Single bulged A | ||
| IL_4V76_038 | Isolated non-canonical cWW pair | ||
| IL_4V76_039 | No text annotation | ||
| IL_4V76_040 | No text annotation | ||
| IL_4V76_041 | Minor groove platform | ||
| IL_4V76_042 | No text annotation | ||
| IL_4V76_198 | Single stack bend | ||
| IL_4V76_179 | Isolated near basepair | ||
| IL_4V76_043 | Single bulged U | ||
| IL_4V76_044 | Isolated cWS basepair | ||
| IL_4V76_045 | Minor groove platform | ||
| IL_4V76_180 | Isolated non-canonical cWW pair | ||
| IL_4V76_046 | Single bulged A | ||
| IL_4V76_047 | Isolated non-canonical cWW pair | ||
| IL_4V76_048 | No text annotation | ||
| IL_4V76_049 | Minor groove platform | ||
| IL_4V76_050 | No text annotation | ||
| IL_4V76_051 | No text annotation | ||
| IL_4V76_181 | No text annotation | ||
| IL_4V76_052 | No text annotation | ||
| IL_4V76_053 | 180 degree turn | ||
| IL_4V76_054 | Double sheared with non-canonical cWW | ||
| IL_4V76_055 | No text annotation | ||
| IL_4V76_056 | Isolated non-canonical cWW pair | ||
| IL_4V76_057 | No text annotation | ||
| IL_4V76_058 | No text annotation | ||
| IL_4V76_059 | Isolated non-canonical cWW pair | ||
| IL_4V76_060 | Decoding loop related | ||
| IL_4V76_182 | Isolated non-canonical cWW pair | ||
| IL_4V76_061 | Tandem non-canonical cWW pairs | ||
| IL_4V76_062 | Double sheared | ||
| IL_4V76_063 | Triple sheared related | ||
| IL_4V76_064 | Major groove platform with extra cWW | ||
| IL_4V76_065 | No text annotation | ||
| IL_4V76_066 | Triple sheared with non-canonical cWW | ||
| IL_4V76_067 | Single bulged A | ||
| IL_4V76_068 | Minor groove platform | ||
| IL_4V76_069 | No text annotation | ||
| IL_4V76_183 | Single stack bend | ||
| IL_4V76_070 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V76_071 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V76_072 | No text annotation | ||
| IL_4V76_073 | No text annotation | ||
| IL_4V76_074 | No text annotation | ||
| IL_4V76_075 | No text annotation | ||
| IL_4V76_076 | Double sheared | ||
| IL_4V76_184 | Isolated non-canonical cWW pair | ||
| IL_4V76_077 | Isolated non-canonical cWW pair | ||
| IL_4V76_078 | AAA cross-strand stack | ||
| IL_4V76_079 | Isolated non-canonical cWW pair | ||
| IL_4V76_080 | tHW-tHW cross-strand stack | ||
| IL_4V76_081 | Single bulged A | ||
| IL_4V76_082 | Isolated cWH basepair | ||
| IL_4V76_083 | Triple sheared | ||
| IL_4V76_084 | Major groove platform | ||
| IL_4V76_085 | Multiple bulged bases | ||
| IL_4V76_086 | Single stack bend | ||
| IL_4V76_087 | No text annotation | ||
| IL_4V76_088 | No text annotation | ||
| IL_4V76_199 | Single stack bend | ||
| IL_4V76_089 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V76_090 | Single bulged G | ||
| IL_4V76_091 | C-loop | ||
| IL_4V76_200 | Isolated non-canonical cWW pair | ||
| IL_4V76_092 | Tandem non-canonical cWW pairs | ||
| IL_4V76_093 | Double sheared with non-canonical cWW | ||
| IL_4V76_185 | Multiple bulged bases | ||
| IL_4V76_094 | No text annotation | ||
| IL_4V76_095 | Single bulged C | ||
| IL_4V76_096 | UAA/GAN | ||
| IL_4V76_097 | SSU/LSU pseudoknot | ||
| IL_4V76_098 | Single bulged U | ||
| IL_4V76_099 | Kink-turn related | ||
| IL_4V76_100 | No text annotation | ||
| IL_4V76_101 | Isolated non-canonical cWW pair | ||
| IL_4V76_102 | Tandem non-canonical cWW pairs | ||
| IL_4V76_103 | Kink-turn | ||
| IL_4V76_104 | No text annotation | ||
| IL_4V76_201 | No text annotation | ||
| IL_4V76_105 | Major groove platform with extra cWW | ||
| IL_4V76_106 | Isolated cWS basepair | ||
| IL_4V76_186 | No text annotation | ||
| IL_4V76_107 | No text annotation | ||
| IL_4V76_108 | Kink-turn | ||
| IL_4V76_109 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V76_110 | Major groove platform; stack outside cWW | ||
| IL_4V76_111 | Single stack bend | ||
| IL_4V76_187 | No text annotation | ||
| IL_4V76_112 | No text annotation | ||
| IL_4V76_113 | UAA/GAN | ||
| IL_4V76_114 | tSH-tHW-tHS | ||
| IL_4V76_115 | No text annotation | ||
| IL_4V76_116 | UAA/GAN | ||
| IL_4V76_117 | No text annotation | ||
| IL_4V76_118 | tSH-tHW | ||
| IL_4V76_119 | No text annotation | ||
| IL_4V76_120 | tSH-tHW-tHS | ||
| IL_4V76_121 | No text annotation | ||
| IL_4V76_122 | Single bulged A | ||
| IL_4V76_123 | UAA/GAN variation | ||
| IL_4V76_124 | No text annotation | ||
| IL_4V76_125 | Isolated tWW turn | ||
| IL_4V76_126 | Major groove platform; stack outside cWW | ||
| IL_4V76_188 | No text annotation | ||
| IL_4V76_127 | Intercalated tWH | ||
| IL_4V76_128 | tSH-tSH-tHH-tHS | ||
| IL_4V76_129 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V76_130 | Triple sheared | ||
| IL_4V76_131 | Single bulged C | ||
| IL_4V76_132 | Single bulged A | ||
| IL_4V76_133 | Kink-turn related | ||
| IL_4V76_134 | Minor groove platform, major groove intercalation | ||
| IL_4V76_135 | Major groove intercalation | ||
| IL_4V76_136 | Minor groove platform | ||
| IL_4V76_189 | No text annotation | ||
| IL_4V76_137 | UAA/GAN related | ||
| IL_4V76_138 | Bulged stacked bases | ||
| IL_4V76_190 | No text annotation | ||
| IL_4V76_139 | No text annotation | ||
| IL_4V76_140 | Major groove platform | ||
| IL_4V76_141 | No text annotation | ||
| IL_4V76_142 | Single bulged U | ||
| IL_4V76_143 | Minor groove platform | ||
| IL_4V76_144 | Isolated tHS basepair with bulges | ||
| IL_4V76_145 | Isolated non-canonical cWW pair | ||
| IL_4V76_146 | Other IL | ||
| IL_4V76_147 | Isolated non-canonical cWW pair | ||
| IL_4V76_148 | Multiple bulged bases | ||
| IL_4V76_149 | No text annotation | ||
| IL_4V76_202 | No text annotation | ||
| IL_4V76_191 | No text annotation | ||
| IL_4V76_150 | Single bulged U | ||
| IL_4V76_151 | No text annotation | ||
| IL_4V76_152 | Double sheared | ||
| IL_4V76_153 | No text annotation | ||
| IL_4V76_192 | Major groove platform | ||
| IL_4V76_154 | No text annotation | ||
| IL_4V76_193 | No text annotation | ||
| IL_4V76_155 | Major groove minor groove platform with extra cWW | ||
| IL_4V76_156 | Double sheared with non-canonical cWW | ||
| IL_4V76_157 | Major groove platform | ||
| IL_4V76_158 | Isolated non-canonical cWW with bulges | ||
| IL_4V76_159 | No text annotation | ||
| IL_4V76_160 | Major groove platform with intercalation | ||
| IL_4V76_161 | Single bulged A | ||
| IL_4V76_162 | tSH-tHS-tHW | ||
| IL_4V76_163 | No text annotation | ||
| IL_4V76_164 | C-loop | ||
| IL_4V76_165 | UAA/GAN related, with intercalation | ||
| IL_4V76_166 | Multiple bulged bases | ||
| IL_4V76_167 | UAA/GAN with extra cWW | ||
| IL_4V76_168 | No text annotation | ||
| IL_4V76_169 | Major groove intercalation | ||
| IL_4V76_170 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V76_171 | No text annotation | ||
| IL_4V76_172 | Major groove intercalation | ||
| IL_4V76_173 | No text annotation | ||
| IL_4V76_174 | Major groove minor groove platform; mini C-loop | ||
| IL_4V76_175 | Symmetric double minor groove platform | ||
| IL_4V76_176 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V76_001 | No text annotation | ||
| J3_4V76_028 | No text annotation | ||
| J3_4V76_002 | No text annotation | ||
| J3_4V76_029 | No text annotation | ||
| J3_4V76_003 | No text annotation | ||
| J3_4V76_004 | No text annotation | ||
| J3_4V76_030 | No text annotation | ||
| J3_4V76_005 | No text annotation | ||
| J3_4V76_006 | No text annotation | ||
| J3_4V76_007 | No text annotation | ||
| J3_4V76_031 | No text annotation | ||
| J3_4V76_008 | No text annotation | ||
| J3_4V76_009 | No text annotation | ||
| J3_4V76_010 | No text annotation | ||
| J3_4V76_011 | No text annotation | ||
| J3_4V76_032 | No text annotation | ||
| J3_4V76_012 | No text annotation | ||
| J3_4V76_013 | No text annotation | ||
| J3_4V76_033 | No text annotation | ||
| J3_4V76_034 | No text annotation | ||
| J3_4V76_014 | No text annotation | ||
| J3_4V76_035 | No text annotation | ||
| J3_4V76_015 | No text annotation | ||
| J3_4V76_016 | No text annotation | ||
| J3_4V76_017 | No text annotation | ||
| J3_4V76_018 | No text annotation | ||
| J3_4V76_019 | No text annotation | ||
| J3_4V76_020 | No text annotation | ||
| J3_4V76_036 | No text annotation | ||
| J3_4V76_021 | Kink-turn 3-way junction | ||
| J3_4V76_022 | No text annotation | ||
| J3_4V76_023 | No text annotation | ||
| J3_4V76_037 | No text annotation | ||
| J3_4V76_024 | No text annotation | ||
| J3_4V76_025 | No text annotation | ||
| J3_4V76_026 | No text annotation | ||
| J3_4V76_027 | No text annotation | ||
| J4_4V76_001 | tRNA junction | ||
| J4_4V76_002 | tRNA junction | ||
| J4_4V76_003 | No text annotation | ||
| J4_4V76_004 | No text annotation | ||
| J4_4V76_005 | No text annotation | ||
| J4_4V76_006 | No text annotation | ||
| J4_4V76_007 | No text annotation | ||
| J4_4V76_008 | No text annotation | ||
| J4_4V76_009 | No text annotation | ||
| J4_4V76_010 | No text annotation | ||
| J4_4V76_011 | No text annotation | ||
| J4_4V76_012 | No text annotation | ||
| J4_4V76_013 | No text annotation | ||
| J4_4V76_014 | No text annotation | ||
| J4_4V76_015 | No text annotation | ||
| J4_4V76_016 | No text annotation | ||
| J5_4V76_001 | No text annotation | ||
| J5_4V76_002 | No text annotation | ||
| J5_4V76_003 | No text annotation | ||
| J5_4V76_004 | No text annotation | ||
| J5_4V76_005 | No text annotation | ||
| J5_4V76_006 | No text annotation | ||
| J5_4V76_007 | No text annotation | ||
| J5_4V76_008 | No text annotation | ||
| J5_4V76_009 | No text annotation | ||
| J6_4V76_001 | No text annotation | ||
| J7_4V76_001 | No text annotation | ||
| J7_4V76_002 | No text annotation |
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