3D structure

PDB id
4V76 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
4V76|1|AA|A|1362, 4V76|1|AA|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V76_036 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.4078
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V76|1|AA|G|1356
4V76|1|AA|A|1357
4V76|1|AA|U|1358
4V76|1|AA|C|1359
4V76|1|AA|A|1360
4V76|1|AA|G|1361
4V76|1|AA|A|1362
4V76|1|AA|A|1363
4V76|1|AA|U|1364
4V76|1|AA|G|1365
4V76|1|AA|C|1366

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10
Chain AM
30S ribosomal protein S13
Chain AN
30S ribosomal protein S14

Coloring options:


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