HL_4V78_027

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

4V78|1|AA|G|971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V78_027 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1595

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V78|1|AA|G|963
4V78|1|AA|A|964
4V78|1|AA|U|965
4V78|1|AA|G|966
4V78|1|AA|C|967
4V78|1|AA|A|968
4V78|1|AA|A|969
4V78|1|AA|C|970
4V78|1|AA|G|971
4V78|1|AA|C|972

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A1

Transfer RNA; tRNA

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10