4V78 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V78_001 | No text annotation | ||
| HL_4V78_002 | tRNA anticodon loop | ||
| HL_4V78_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V78_004 | tRNA D-loop | ||
| HL_4V78_005 | tRNA anticodon loop | ||
| HL_4V78_006 | T-loop with 2 stacked bulged bases | ||
| HL_4V78_007 | No text annotation | ||
| HL_4V78_110 | No text annotation | ||
| HL_4V78_008 | Externally structured | ||
| HL_4V78_009 | GNRA | ||
| HL_4V78_010 | GNRA | ||
| HL_4V78_011 | UNCG | ||
| HL_4V78_012 | GNRA related | ||
| HL_4V78_013 | GNRA | ||
| HL_4V78_014 | No text annotation | ||
| HL_4V78_015 | UNCG | ||
| HL_4V78_016 | No text annotation | ||
| HL_4V78_017 | UNCG | ||
| HL_4V78_018 | No text annotation | ||
| HL_4V78_019 | Mini UNCG | ||
| HL_4V78_020 | GNRA-like with tWH | ||
| HL_4V78_021 | No text annotation | ||
| HL_4V78_022 | GNRA | ||
| HL_4V78_023 | No text annotation | ||
| HL_4V78_024 | No text annotation | ||
| HL_4V78_025 | GNRA | ||
| HL_4V78_026 | GNRA | ||
| HL_4V78_027 | No text annotation | ||
| HL_4V78_028 | GNRA | ||
| HL_4V78_029 | No text annotation | ||
| HL_4V78_030 | GNRA | ||
| HL_4V78_031 | T-loop related | ||
| HL_4V78_032 | No text annotation | ||
| HL_4V78_033 | GNRA | ||
| HL_4V78_034 | GNRA | ||
| HL_4V78_035 | T-loop with 3 stacked bulged bases | ||
| HL_4V78_036 | No text annotation | ||
| HL_4V78_037 | No text annotation | ||
| HL_4V78_038 | GNRA | ||
| HL_4V78_039 | Pseudoknot geometry | ||
| HL_4V78_040 | No text annotation | ||
| HL_4V78_041 | No text annotation | ||
| HL_4V78_042 | No text annotation | ||
| HL_4V78_043 | No text annotation | ||
| HL_4V78_044 | No text annotation | ||
| HL_4V78_045 | No text annotation | ||
| HL_4V78_046 | No text annotation | ||
| HL_4V78_047 | T-loop with 2 stacked bulged bases | ||
| HL_4V78_048 | No text annotation | ||
| HL_4V78_049 | T-loop with unstacked turn | ||
| HL_4V78_050 | No text annotation | ||
| HL_4V78_051 | No text annotation | ||
| HL_4V78_052 | GNRA | ||
| HL_4V78_053 | GNRA | ||
| HL_4V78_054 | No text annotation | ||
| HL_4V78_055 | T-loop with 2 stacked bulged bases | ||
| HL_4V78_056 | No text annotation | ||
| HL_4V78_057 | GNRA | ||
| HL_4V78_058 | No text annotation | ||
| HL_4V78_059 | GNRA wlth tandem sheared | ||
| HL_4V78_060 | No text annotation | ||
| HL_4V78_061 | UNCG variation | ||
| HL_4V78_062 | No text annotation | ||
| HL_4V78_063 | No text annotation | ||
| HL_4V78_064 | No text annotation | ||
| HL_4V78_065 | No text annotation | ||
| HL_4V78_066 | No text annotation | ||
| HL_4V78_067 | No text annotation | ||
| HL_4V78_068 | No text annotation | ||
| HL_4V78_069 | GNRA | ||
| HL_4V78_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V78_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V78_072 | GNRA | ||
| HL_4V78_073 | No text annotation | ||
| HL_4V78_074 | No text annotation | ||
| HL_4V78_075 | No text annotation | ||
| HL_4V78_076 | No text annotation | ||
| HL_4V78_077 | Mini UNCG | ||
| HL_4V78_078 | No text annotation | ||
| HL_4V78_079 | GNRA | ||
| HL_4V78_080 | No text annotation | ||
| HL_4V78_081 | No text annotation | ||
| HL_4V78_082 | No text annotation | ||
| HL_4V78_083 | No text annotation | ||
| HL_4V78_084 | GNRA related | ||
| HL_4V78_085 | UNCG variation | ||
| HL_4V78_086 | No text annotation | ||
| HL_4V78_111 | No text annotation | ||
| HL_4V78_087 | No text annotation | ||
| HL_4V78_088 | No text annotation | ||
| HL_4V78_089 | UNCG | ||
| HL_4V78_090 | No text annotation | ||
| HL_4V78_091 | No text annotation | ||
| HL_4V78_092 | No text annotation | ||
| HL_4V78_093 | No text annotation | ||
| HL_4V78_094 | Pseudoknot geometry | ||
| HL_4V78_095 | GNRA | ||
| HL_4V78_096 | GNRA | ||
| HL_4V78_097 | No text annotation | ||
| HL_4V78_098 | No text annotation | ||
| HL_4V78_099 | No text annotation | ||
| HL_4V78_100 | No text annotation | ||
| HL_4V78_101 | GNRA | ||
| HL_4V78_102 | GNRA | ||
| HL_4V78_103 | Ribsomal LSU H95 | ||
| HL_4V78_104 | No text annotation | ||
| HL_4V78_105 | No text annotation | ||
| HL_4V78_106 | No text annotation | ||
| HL_4V78_107 | GNRA | ||
| HL_4V78_112 | No text annotation | ||
| HL_4V78_108 | No text annotation | ||
| HL_4V78_109 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V78_001 | Single bulged G | ||
| IL_4V78_002 | Single bulged A | ||
| IL_4V78_003 | No text annotation | ||
| IL_4V78_004 | Minor groove platform | ||
| IL_4V78_005 | Multiple bulged bases | ||
| IL_4V78_006 | Minor groove platform with extra cWW | ||
| IL_4V78_007 | Minor groove platform | ||
| IL_4V78_008 | Major groove intercalation | ||
| IL_4V78_009 | Isolated non-canonical cWW pair | ||
| IL_4V78_010 | Minor groove platform related | ||
| IL_4V78_011 | Isolated cWH basepair | ||
| IL_4V78_012 | tWH-tWH-tHW-tHW | ||
| IL_4V78_013 | Minor groove platform | ||
| IL_4V78_014 | Kink-turn with non-sequential stacking | ||
| IL_4V78_188 | No text annotation | ||
| IL_4V78_015 | No text annotation | ||
| IL_4V78_016 | C-loop | ||
| IL_4V78_017 | Single bulged U | ||
| IL_4V78_018 | C-loop | ||
| IL_4V78_019 | Single bulged G | ||
| IL_4V78_020 | No text annotation | ||
| IL_4V78_021 | No text annotation | ||
| IL_4V78_022 | tSH-tHW-tWW | ||
| IL_4V78_023 | No text annotation | ||
| IL_4V78_024 | SSU/LSU pseudoknot | ||
| IL_4V78_025 | Kink-turn related | ||
| IL_4V78_026 | No text annotation | ||
| IL_4V78_027 | tSH-tHW-tHS | ||
| IL_4V78_028 | Major groove platform | ||
| IL_4V78_181 | Minor groove platform | ||
| IL_4V78_029 | No text annotation | ||
| IL_4V78_189 | No text annotation | ||
| IL_4V78_030 | No text annotation | ||
| IL_4V78_031 | Major groove platform; stack outside cWW | ||
| IL_4V78_032 | Single stack bend | ||
| IL_4V78_033 | Tandem non-canonical cWW pairs | ||
| IL_4V78_034 | No text annotation | ||
| IL_4V78_035 | Kink-turn | ||
| IL_4V78_036 | Left turn | ||
| IL_4V78_037 | tSH-tHW-tHS | ||
| IL_4V78_038 | Isolated non-canonical cWW pair | ||
| IL_4V78_039 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V78_040 | Single bulged A | ||
| IL_4V78_041 | Isolated non-canonical cWW pair | ||
| IL_4V78_042 | No text annotation | ||
| IL_4V78_043 | No text annotation | ||
| IL_4V78_044 | No text annotation | ||
| IL_4V78_045 | Single stack bend | ||
| IL_4V78_046 | Single bulged U | ||
| IL_4V78_047 | No text annotation | ||
| IL_4V78_048 | Minor groove platform | ||
| IL_4V78_049 | Single bulged A | ||
| IL_4V78_050 | Isolated non-canonical cWW pair | ||
| IL_4V78_051 | No text annotation | ||
| IL_4V78_190 | No text annotation | ||
| IL_4V78_052 | Minor groove platform | ||
| IL_4V78_053 | No text annotation | ||
| IL_4V78_054 | No text annotation | ||
| IL_4V78_055 | Isolated non-canonical cWW pair | ||
| IL_4V78_056 | 180 degree turn | ||
| IL_4V78_057 | Double sheared with non-canonical cWW | ||
| IL_4V78_058 | No text annotation | ||
| IL_4V78_059 | No text annotation | ||
| IL_4V78_060 | No text annotation | ||
| IL_4V78_061 | Isolated non-canonical cWW pair | ||
| IL_4V78_062 | Isolated non-canonical cWW pair | ||
| IL_4V78_182 | Isolated non-canonical cWW pair | ||
| IL_4V78_063 | Tandem non-canonical cWW pairs | ||
| IL_4V78_064 | Double sheared | ||
| IL_4V78_065 | Triple sheared related | ||
| IL_4V78_066 | Major groove platform with extra cWW | ||
| IL_4V78_067 | No text annotation | ||
| IL_4V78_191 | Single stack bend | ||
| IL_4V78_068 | No text annotation | ||
| IL_4V78_183 | No text annotation | ||
| IL_4V78_069 | Triple sheared with non-canonical cWW | ||
| IL_4V78_070 | Isolated cWS basepair | ||
| IL_4V78_071 | Minor groove platform | ||
| IL_4V78_072 | No text annotation | ||
| IL_4V78_073 | Single stack bend | ||
| IL_4V78_074 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V78_075 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V78_076 | No text annotation | ||
| IL_4V78_077 | No text annotation | ||
| IL_4V78_078 | No text annotation | ||
| IL_4V78_079 | No text annotation | ||
| IL_4V78_080 | No text annotation | ||
| IL_4V78_081 | Double sheared | ||
| IL_4V78_082 | Isolated non-canonical cWW pair | ||
| IL_4V78_192 | Major groove platform | ||
| IL_4V78_083 | No text annotation | ||
| IL_4V78_184 | AAA cross-strand stack | ||
| IL_4V78_084 | No text annotation | ||
| IL_4V78_085 | tHW-tHW cross-strand stack | ||
| IL_4V78_086 | Single bulged A | ||
| IL_4V78_087 | Single bulged G | ||
| IL_4V78_088 | Triple sheared | ||
| IL_4V78_089 | Major groove platform | ||
| IL_4V78_090 | Multiple bulged bases | ||
| IL_4V78_091 | No text annotation | ||
| IL_4V78_092 | No text annotation | ||
| IL_4V78_193 | Single stack bend | ||
| IL_4V78_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V78_094 | Single bulged G | ||
| IL_4V78_095 | C-loop with bulged stacked A's | ||
| IL_4V78_096 | Isolated non-canonical cWW pair | ||
| IL_4V78_097 | Double sheared with non-canonical cWW | ||
| IL_4V78_098 | No text annotation | ||
| IL_4V78_099 | Single bulged C | ||
| IL_4V78_100 | UAA/GAN | ||
| IL_4V78_101 | SSU/LSU pseudoknot | ||
| IL_4V78_102 | Single bulged U | ||
| IL_4V78_103 | Kink-turn related | ||
| IL_4V78_104 | No text annotation | ||
| IL_4V78_105 | Isolated non-canonical cWW pair | ||
| IL_4V78_106 | Tandem non-canonical cWW pairs | ||
| IL_4V78_107 | Kink-turn | ||
| IL_4V78_108 | No text annotation | ||
| IL_4V78_109 | Major groove intercalation | ||
| IL_4V78_110 | Isolated cWS basepair | ||
| IL_4V78_111 | No text annotation | ||
| IL_4V78_112 | Kink-turn | ||
| IL_4V78_113 | Major groove platform; stack outside cWW | ||
| IL_4V78_114 | Major groove minor groove platform with tHH | ||
| IL_4V78_115 | UAA/GAN | ||
| IL_4V78_116 | tSH-tHW-tHS | ||
| IL_4V78_117 | No text annotation | ||
| IL_4V78_118 | UAA/GAN | ||
| IL_4V78_119 | No text annotation | ||
| IL_4V78_120 | No text annotation | ||
| IL_4V78_121 | No text annotation | ||
| IL_4V78_122 | tSH-tHW-tHS | ||
| IL_4V78_123 | 180 degree turn | ||
| IL_4V78_124 | Single bulged A | ||
| IL_4V78_125 | UAA/GAN variation | ||
| IL_4V78_126 | No text annotation | ||
| IL_4V78_127 | Isolated tWW turn | ||
| IL_4V78_128 | Major groove platform; stack outside cWW | ||
| IL_4V78_185 | No text annotation | ||
| IL_4V78_129 | Intercalated tWH | ||
| IL_4V78_130 | tSH-tSH-tHH-tHS | ||
| IL_4V78_131 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V78_132 | Triple sheared | ||
| IL_4V78_133 | Single bulged C | ||
| IL_4V78_134 | Single bulged A | ||
| IL_4V78_135 | Kink-turn related | ||
| IL_4V78_136 | Minor groove platform, major groove intercalation | ||
| IL_4V78_137 | Major groove intercalation | ||
| IL_4V78_138 | Minor groove platform | ||
| IL_4V78_186 | No text annotation | ||
| IL_4V78_139 | UAA/GAN related | ||
| IL_4V78_140 | Major groove intercalation | ||
| IL_4V78_141 | No text annotation | ||
| IL_4V78_142 | Major groove platform | ||
| IL_4V78_143 | Major groove platform with intercalation | ||
| IL_4V78_144 | Single bulged U | ||
| IL_4V78_145 | Minor groove platform | ||
| IL_4V78_146 | Isolated tHS basepair with bulges | ||
| IL_4V78_147 | Isolated non-canonical cWW pair | ||
| IL_4V78_148 | No text annotation | ||
| IL_4V78_149 | Isolated non-canonical cWW pair | ||
| IL_4V78_150 | Multiple bulged bases | ||
| IL_4V78_151 | No text annotation | ||
| IL_4V78_152 | No text annotation | ||
| IL_4V78_194 | No text annotation | ||
| IL_4V78_187 | No text annotation | ||
| IL_4V78_153 | Single bulged U | ||
| IL_4V78_154 | No text annotation | ||
| IL_4V78_155 | Double sheared | ||
| IL_4V78_156 | Major groove platform | ||
| IL_4V78_157 | Major groove platform | ||
| IL_4V78_158 | Major groove platform | ||
| IL_4V78_159 | No text annotation | ||
| IL_4V78_160 | Double sheared with non-canonical cWW | ||
| IL_4V78_161 | Major groove platform | ||
| IL_4V78_162 | Isolated non-canonical cWW with bulges | ||
| IL_4V78_163 | Multiple bulged bases | ||
| IL_4V78_164 | Major groove platform with intercalation | ||
| IL_4V78_165 | Single bulged A | ||
| IL_4V78_166 | tSH-tHS-tHW | ||
| IL_4V78_167 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V78_168 | No text annotation | ||
| IL_4V78_195 | C-loop | ||
| IL_4V78_169 | No text annotation | ||
| IL_4V78_170 | Multiple bulged bases | ||
| IL_4V78_171 | UAA/GAN with extra cWW | ||
| IL_4V78_172 | No text annotation | ||
| IL_4V78_173 | Single bulged C | ||
| IL_4V78_174 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V78_175 | No text annotation | ||
| IL_4V78_176 | Major groove intercalation | ||
| IL_4V78_177 | No text annotation | ||
| IL_4V78_196 | No text annotation | ||
| IL_4V78_178 | No text annotation | ||
| IL_4V78_179 | Symmetric double minor groove platform | ||
| IL_4V78_180 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V78_001 | No text annotation | ||
| J3_4V78_028 | No text annotation | ||
| J3_4V78_002 | No text annotation | ||
| J3_4V78_029 | No text annotation | ||
| J3_4V78_003 | No text annotation | ||
| J3_4V78_004 | No text annotation | ||
| J3_4V78_005 | No text annotation | ||
| J3_4V78_006 | No text annotation | ||
| J3_4V78_007 | No text annotation | ||
| J3_4V78_008 | No text annotation | ||
| J3_4V78_030 | No text annotation | ||
| J3_4V78_009 | No text annotation | ||
| J3_4V78_010 | No text annotation | ||
| J3_4V78_011 | No text annotation | ||
| J3_4V78_012 | No text annotation | ||
| J3_4V78_031 | No text annotation | ||
| J3_4V78_013 | No text annotation | ||
| J3_4V78_014 | No text annotation | ||
| J3_4V78_032 | No text annotation | ||
| J3_4V78_033 | No text annotation | ||
| J3_4V78_015 | No text annotation | ||
| J3_4V78_016 | No text annotation | ||
| J3_4V78_017 | No text annotation | ||
| J3_4V78_018 | No text annotation | ||
| J3_4V78_019 | No text annotation | ||
| J3_4V78_020 | No text annotation | ||
| J3_4V78_021 | No text annotation | ||
| J3_4V78_034 | No text annotation | ||
| J3_4V78_022 | No text annotation | ||
| J3_4V78_035 | No text annotation | ||
| J3_4V78_023 | No text annotation | ||
| J3_4V78_024 | No text annotation | ||
| J3_4V78_025 | No text annotation | ||
| J3_4V78_036 | No text annotation | ||
| J3_4V78_026 | No text annotation | ||
| J3_4V78_027 | No text annotation | ||
| J4_4V78_001 | tRNA junction | ||
| J4_4V78_002 | tRNA junction | ||
| J4_4V78_003 | No text annotation | ||
| J4_4V78_004 | No text annotation | ||
| J4_4V78_005 | No text annotation | ||
| J4_4V78_006 | No text annotation | ||
| J4_4V78_007 | No text annotation | ||
| J4_4V78_008 | No text annotation | ||
| J4_4V78_009 | No text annotation | ||
| J4_4V78_010 | No text annotation | ||
| J4_4V78_011 | No text annotation | ||
| J4_4V78_012 | No text annotation | ||
| J4_4V78_013 | No text annotation | ||
| J4_4V78_014 | No text annotation | ||
| J4_4V78_015 | No text annotation | ||
| J4_4V78_016 | No text annotation | ||
| J5_4V78_001 | No text annotation | ||
| J5_4V78_002 | No text annotation | ||
| J5_4V78_003 | No text annotation | ||
| J5_4V78_004 | No text annotation | ||
| J5_4V78_005 | No text annotation | ||
| J5_4V78_010 | No text annotation | ||
| J5_4V78_006 | No text annotation | ||
| J5_4V78_007 | No text annotation | ||
| J5_4V78_011 | No text annotation | ||
| J5_4V78_008 | No text annotation | ||
| J5_4V78_009 | No text annotation | ||
| J6_4V78_001 | No text annotation | ||
| J6_4V78_002 | No text annotation | ||
| J7_4V78_001 | No text annotation | ||
| J7_4V78_002 | No text annotation |
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