HL_4V78_064

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

GGUGCUAACGUC

Length

12 nucleotides

Bulged bases

4V78|1|BA|U|958, 4V78|1|BA|C|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V78_064 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3418

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V78|1|BA|G|953
4V78|1|BA|G|954
4V78|1|BA|U|955
4V78|1|BA|G|956
4V78|1|BA|C|957
4V78|1|BA|U|958
4V78|1|BA|A|959
4V78|1|BA|A|960
4V78|1|BA|C|961
4V78|1|BA|G|962
4V78|1|BA|U|963
4V78|1|BA|C|964

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16