HL_4V79_005

3D structure

PDB id

4V79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

G(OMC)UCAUAAC

Length

9 nucleotides

Bulged bases

4V79|1|A3|U|34

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V79_005 not in the Motif Atlas

Homologous match to HL_4YCO_002

Geometric discrepancy: 0.1451

The information below is about HL_4YCO_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.6

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4V79|1|A3|G|32
4V79|1|A3|OMC|33
4V79|1|A3|U|34
4V79|1|A3|C|35
4V79|1|A3|A|36
4V79|1|A3|U|37
4V79|1|A3|A|38
4V79|1|A3|A|39
4V79|1|A3|C|40

Current chains

Chain A3

tRNA-fMet

Nearby chains

Chain BF

50S ribosomal protein L5