4V79 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V79_001 | tRNA D-loop | ||
| HL_4V79_002 | tRNA anticodon loop | ||
| HL_4V79_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V79_004 | No text annotation | ||
| HL_4V79_005 | tRNA anticodon loop | ||
| HL_4V79_006 | T-loop with 2 stacked bulged bases | ||
| HL_4V79_007 | No text annotation | ||
| HL_4V79_008 | Mini UNCG | ||
| HL_4V79_009 | GNRA | ||
| HL_4V79_010 | GNRA | ||
| HL_4V79_011 | No text annotation | ||
| HL_4V79_012 | GNRA related | ||
| HL_4V79_013 | GNRA | ||
| HL_4V79_014 | No text annotation | ||
| HL_4V79_015 | UNCG | ||
| HL_4V79_016 | No text annotation | ||
| HL_4V79_017 | UNCG | ||
| HL_4V79_018 | No text annotation | ||
| HL_4V79_019 | GNRA | ||
| HL_4V79_020 | GNRA-like with tWH | ||
| HL_4V79_021 | No text annotation | ||
| HL_4V79_022 | GNRA | ||
| HL_4V79_023 | No text annotation | ||
| HL_4V79_024 | Mini UNCG | ||
| HL_4V79_025 | GNRA | ||
| HL_4V79_026 | GNRA | ||
| HL_4V79_027 | No text annotation | ||
| HL_4V79_028 | GNRA | ||
| HL_4V79_029 | No text annotation | ||
| HL_4V79_030 | GNRA | ||
| HL_4V79_031 | T-loop related | ||
| HL_4V79_032 | No text annotation | ||
| HL_4V79_033 | GNRA | ||
| HL_4V79_034 | No text annotation | ||
| HL_4V79_035 | T-loop with 3 stacked bulged bases | ||
| HL_4V79_036 | No text annotation | ||
| HL_4V79_037 | UNCG | ||
| HL_4V79_038 | GNRA | ||
| HL_4V79_039 | Pseudoknot with intercalation | ||
| HL_4V79_040 | No text annotation | ||
| HL_4V79_041 | No text annotation | ||
| HL_4V79_042 | No text annotation | ||
| HL_4V79_043 | No text annotation | ||
| HL_4V79_044 | No text annotation | ||
| HL_4V79_045 | No text annotation | ||
| HL_4V79_046 | No text annotation | ||
| HL_4V79_047 | T-loop with 2 stacked bulged bases | ||
| HL_4V79_048 | No text annotation | ||
| HL_4V79_049 | T-loop with unstacked turn | ||
| HL_4V79_050 | No text annotation | ||
| HL_4V79_051 | No text annotation | ||
| HL_4V79_052 | GNRA | ||
| HL_4V79_053 | GNRA | ||
| HL_4V79_054 | No text annotation | ||
| HL_4V79_055 | No text annotation | ||
| HL_4V79_056 | No text annotation | ||
| HL_4V79_057 | GNRA | ||
| HL_4V79_058 | No text annotation | ||
| HL_4V79_110 | No text annotation | ||
| HL_4V79_059 | T-loop with 1 bulged base | ||
| HL_4V79_060 | No text annotation | ||
| HL_4V79_061 | UNCG variation | ||
| HL_4V79_062 | No text annotation | ||
| HL_4V79_063 | No text annotation | ||
| HL_4V79_064 | GNRA | ||
| HL_4V79_065 | No text annotation | ||
| HL_4V79_066 | No text annotation | ||
| HL_4V79_067 | GNRA related | ||
| HL_4V79_068 | No text annotation | ||
| HL_4V79_069 | GNRA | ||
| HL_4V79_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V79_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V79_072 | GNRA | ||
| HL_4V79_073 | No text annotation | ||
| HL_4V79_114 | No text annotation | ||
| HL_4V79_074 | No text annotation | ||
| HL_4V79_075 | Pseudoknot geometry with 3' bulge | ||
| HL_4V79_076 | No text annotation | ||
| HL_4V79_077 | No text annotation | ||
| HL_4V79_078 | No text annotation | ||
| HL_4V79_079 | GNRA | ||
| HL_4V79_080 | UNCG | ||
| HL_4V79_081 | No text annotation | ||
| HL_4V79_082 | No text annotation | ||
| HL_4V79_083 | No text annotation | ||
| HL_4V79_084 | GNRA related | ||
| HL_4V79_085 | UNCG variation | ||
| HL_4V79_086 | No text annotation | ||
| HL_4V79_087 | No text annotation | ||
| HL_4V79_088 | No text annotation | ||
| HL_4V79_089 | UNCG | ||
| HL_4V79_090 | No text annotation | ||
| HL_4V79_091 | No text annotation | ||
| HL_4V79_092 | No text annotation | ||
| HL_4V79_093 | No text annotation | ||
| HL_4V79_111 | No text annotation | ||
| HL_4V79_094 | No text annotation | ||
| HL_4V79_112 | Pseudoknot geometry | ||
| HL_4V79_095 | GNRA | ||
| HL_4V79_096 | GNRA | ||
| HL_4V79_097 | No text annotation | ||
| HL_4V79_098 | No text annotation | ||
| HL_4V79_099 | GNRA variation | ||
| HL_4V79_100 | No text annotation | ||
| HL_4V79_101 | GNRA | ||
| HL_4V79_102 | GNRA related | ||
| HL_4V79_103 | No text annotation | ||
| HL_4V79_104 | No text annotation | ||
| HL_4V79_105 | No text annotation | ||
| HL_4V79_106 | No text annotation | ||
| HL_4V79_107 | GNRA | ||
| HL_4V79_113 | No text annotation | ||
| HL_4V79_108 | No text annotation | ||
| HL_4V79_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V79_001 | Single bulged G | ||
| IL_4V79_002 | Isolated non-canonical cWW with bulges | ||
| IL_4V79_003 | No text annotation | ||
| IL_4V79_004 | Single stack bend | ||
| IL_4V79_005 | Multiple bulged bases | ||
| IL_4V79_006 | Minor groove platform with extra cWW | ||
| IL_4V79_007 | Minor groove platform | ||
| IL_4V79_008 | Major groove intercalation | ||
| IL_4V79_009 | Isolated non-canonical cWW pair | ||
| IL_4V79_010 | Minor groove platform related | ||
| IL_4V79_011 | Isolated cWH basepair | ||
| IL_4V79_012 | tWH-tWH-tHW-tHW | ||
| IL_4V79_013 | Minor groove platform | ||
| IL_4V79_014 | Kink-turn with non-sequential stacking | ||
| IL_4V79_015 | No text annotation | ||
| IL_4V79_016 | C-loop | ||
| IL_4V79_017 | Single bulged U | ||
| IL_4V79_018 | C-loop | ||
| IL_4V79_019 | Single bulged G | ||
| IL_4V79_172 | No text annotation | ||
| IL_4V79_020 | No text annotation | ||
| IL_4V79_021 | No text annotation | ||
| IL_4V79_022 | tSH-tHW-tWW | ||
| IL_4V79_173 | No text annotation | ||
| IL_4V79_023 | SSU/LSU pseudoknot | ||
| IL_4V79_024 | Kink-turn related | ||
| IL_4V79_025 | No text annotation | ||
| IL_4V79_026 | tSH-tHW-tHS | ||
| IL_4V79_027 | Major groove platform | ||
| IL_4V79_028 | Major groove minor groove platform; mini C-loop | ||
| IL_4V79_186 | No text annotation | ||
| IL_4V79_029 | No text annotation | ||
| IL_4V79_030 | Major groove platform; stack outside cWW | ||
| IL_4V79_031 | Single stack bend | ||
| IL_4V79_032 | No text annotation | ||
| IL_4V79_033 | No text annotation | ||
| IL_4V79_034 | Left turn | ||
| IL_4V79_035 | tSH-tHW-tHS | ||
| IL_4V79_036 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V79_037 | Tandem non-canonical cWW pairs | ||
| IL_4V79_187 | Single bulged A | ||
| IL_4V79_038 | No text annotation | ||
| IL_4V79_039 | No text annotation | ||
| IL_4V79_040 | No text annotation | ||
| IL_4V79_174 | No text annotation | ||
| IL_4V79_175 | Minor groove platform | ||
| IL_4V79_041 | No text annotation | ||
| IL_4V79_042 | Single bulged U | ||
| IL_4V79_043 | Tandem non-canonical cWW pairs | ||
| IL_4V79_176 | No text annotation | ||
| IL_4V79_044 | Minor groove platform | ||
| IL_4V79_045 | No text annotation | ||
| IL_4V79_046 | Isolated non-canonical cWW pair | ||
| IL_4V79_047 | No text annotation | ||
| IL_4V79_048 | Minor groove platform | ||
| IL_4V79_049 | No text annotation | ||
| IL_4V79_050 | No text annotation | ||
| IL_4V79_177 | Isolated cWH basepair | ||
| IL_4V79_051 | 180 degree turn | ||
| IL_4V79_052 | Double sheared with non-canonical cWW | ||
| IL_4V79_053 | No text annotation | ||
| IL_4V79_054 | No text annotation | ||
| IL_4V79_055 | No text annotation | ||
| IL_4V79_056 | Isolated non-canonical cWW pair | ||
| IL_4V79_057 | Isolated non-canonical cWW pair | ||
| IL_4V79_058 | Isolated non-canonical cWW pair | ||
| IL_4V79_059 | Double sheared | ||
| IL_4V79_178 | Isolated non-canonical cWW pair | ||
| IL_4V79_060 | No text annotation | ||
| IL_4V79_061 | No text annotation | ||
| IL_4V79_062 | No text annotation | ||
| IL_4V79_063 | No text annotation | ||
| IL_4V79_064 | Single bulged A | ||
| IL_4V79_065 | Minor groove platform | ||
| IL_4V79_066 | No text annotation | ||
| IL_4V79_067 | Single stack bend | ||
| IL_4V79_068 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V79_069 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V79_070 | No text annotation | ||
| IL_4V79_071 | No text annotation | ||
| IL_4V79_072 | No text annotation | ||
| IL_4V79_073 | Double sheared | ||
| IL_4V79_074 | AAA cross-strand stack | ||
| IL_4V79_075 | Isolated non-canonical cWW pair | ||
| IL_4V79_076 | tHW-tHW cross-strand stack | ||
| IL_4V79_077 | Single bulged A | ||
| IL_4V79_078 | Isolated cWS basepair | ||
| IL_4V79_079 | Single bulged G | ||
| IL_4V79_080 | Triple sheared | ||
| IL_4V79_081 | Major groove platform | ||
| IL_4V79_082 | Multiple bulged bases | ||
| IL_4V79_083 | Single stack bend | ||
| IL_4V79_084 | No text annotation | ||
| IL_4V79_085 | No text annotation | ||
| IL_4V79_179 | Single stack bend | ||
| IL_4V79_086 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V79_087 | Single bulged G | ||
| IL_4V79_088 | C-loop | ||
| IL_4V79_089 | Isolated non-canonical cWW pair | ||
| IL_4V79_090 | Double sheared with non-canonical cWW | ||
| IL_4V79_091 | No text annotation | ||
| IL_4V79_092 | No text annotation | ||
| IL_4V79_093 | UAA/GAN | ||
| IL_4V79_094 | SSU/LSU pseudoknot | ||
| IL_4V79_095 | Single bulged U | ||
| IL_4V79_096 | Kink-turn related | ||
| IL_4V79_097 | No text annotation | ||
| IL_4V79_098 | Isolated non-canonical cWW pair | ||
| IL_4V79_099 | Tandem non-canonical cWW pairs | ||
| IL_4V79_100 | Kink-turn | ||
| IL_4V79_101 | No text annotation | ||
| IL_4V79_102 | Multiple bulged bases | ||
| IL_4V79_103 | Isolated cWS basepair | ||
| IL_4V79_104 | No text annotation | ||
| IL_4V79_105 | Kink-turn | ||
| IL_4V79_188 | Major groove minor groove platform with tHH | ||
| IL_4V79_106 | No text annotation | ||
| IL_4V79_107 | UAA/GAN | ||
| IL_4V79_108 | tSH-tHW-tHS | ||
| IL_4V79_109 | No text annotation | ||
| IL_4V79_110 | UAA/GAN | ||
| IL_4V79_111 | Tandem non-canonical cWW pairs | ||
| IL_4V79_112 | tSH-tHW | ||
| IL_4V79_113 | No text annotation | ||
| IL_4V79_114 | tSH-tHW-tHS | ||
| IL_4V79_115 | 180 degree turn | ||
| IL_4V79_116 | Single bulged A | ||
| IL_4V79_117 | No text annotation | ||
| IL_4V79_118 | No text annotation | ||
| IL_4V79_119 | Isolated tWW turn | ||
| IL_4V79_120 | Major groove platform; stack outside cWW | ||
| IL_4V79_180 | No text annotation | ||
| IL_4V79_121 | Intercalated tWH | ||
| IL_4V79_122 | tSH-tSH-tHH-tHS | ||
| IL_4V79_123 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V79_124 | Triple sheared | ||
| IL_4V79_125 | Single bulged C | ||
| IL_4V79_126 | Single bulged A | ||
| IL_4V79_127 | Kink-turn related | ||
| IL_4V79_128 | Minor groove platform, major groove intercalation | ||
| IL_4V79_129 | Major groove intercalation | ||
| IL_4V79_130 | No text annotation | ||
| IL_4V79_189 | Major groove minor groove platform; mini C-loop | ||
| IL_4V79_181 | No text annotation | ||
| IL_4V79_131 | UAA/GAN related | ||
| IL_4V79_132 | Multiple bulged bases | ||
| IL_4V79_133 | No text annotation | ||
| IL_4V79_134 | Major groove platform | ||
| IL_4V79_135 | No text annotation | ||
| IL_4V79_136 | Single bulged U | ||
| IL_4V79_137 | Minor groove platform | ||
| IL_4V79_138 | No text annotation | ||
| IL_4V79_139 | Tandem non-canonical cWW pairs | ||
| IL_4V79_140 | Stack and bulge | ||
| IL_4V79_141 | Isolated non-canonical cWW pair | ||
| IL_4V79_142 | Multiple bulged bases | ||
| IL_4V79_143 | No text annotation | ||
| IL_4V79_182 | No text annotation | ||
| IL_4V79_144 | No text annotation | ||
| IL_4V79_145 | Single bulged U | ||
| IL_4V79_146 | Isolated tHS basepair with bulges | ||
| IL_4V79_147 | Double sheared | ||
| IL_4V79_148 | No text annotation | ||
| IL_4V79_149 | Major groove platform | ||
| IL_4V79_150 | No text annotation | ||
| IL_4V79_151 | Double sheared with non-canonical cWW | ||
| IL_4V79_183 | Major groove platform | ||
| IL_4V79_152 | No text annotation | ||
| IL_4V79_153 | Isolated non-canonical cWW with bulges | ||
| IL_4V79_154 | No text annotation | ||
| IL_4V79_155 | No text annotation | ||
| IL_4V79_184 | Major groove platform with intercalation | ||
| IL_4V79_156 | Single bulged A | ||
| IL_4V79_157 | tSH-tHS-tHW | ||
| IL_4V79_158 | No text annotation | ||
| IL_4V79_159 | C-loop | ||
| IL_4V79_160 | UAA/GAN related, with intercalation | ||
| IL_4V79_161 | Multiple bulged bases | ||
| IL_4V79_162 | UAA/GAN with extra cWW | ||
| IL_4V79_163 | No text annotation | ||
| IL_4V79_185 | Major groove intercalation | ||
| IL_4V79_164 | Isolated non-canonical cWW with bulges | ||
| IL_4V79_165 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V79_166 | No text annotation | ||
| IL_4V79_167 | Major groove intercalation | ||
| IL_4V79_168 | No text annotation | ||
| IL_4V79_169 | Major groove minor groove platform; mini C-loop | ||
| IL_4V79_170 | Symmetric double minor groove platform | ||
| IL_4V79_171 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V79_001 | No text annotation | ||
| J3_4V79_024 | No text annotation | ||
| J3_4V79_025 | No text annotation | ||
| J3_4V79_026 | No text annotation | ||
| J3_4V79_002 | No text annotation | ||
| J3_4V79_027 | No text annotation | ||
| J3_4V79_003 | No text annotation | ||
| J3_4V79_039 | No text annotation | ||
| J3_4V79_028 | No text annotation | ||
| J3_4V79_004 | No text annotation | ||
| J3_4V79_005 | No text annotation | ||
| J3_4V79_029 | No text annotation | ||
| J3_4V79_006 | No text annotation | ||
| J3_4V79_030 | No text annotation | ||
| J3_4V79_007 | No text annotation | ||
| J3_4V79_008 | No text annotation | ||
| J3_4V79_009 | No text annotation | ||
| J3_4V79_010 | No text annotation | ||
| J3_4V79_031 | No text annotation | ||
| J3_4V79_040 | No text annotation | ||
| J3_4V79_041 | No text annotation | ||
| J3_4V79_011 | No text annotation | ||
| J3_4V79_032 | No text annotation | ||
| J3_4V79_033 | No text annotation | ||
| J3_4V79_012 | No text annotation | ||
| J3_4V79_034 | No text annotation | ||
| J3_4V79_013 | No text annotation | ||
| J3_4V79_014 | No text annotation | ||
| J3_4V79_015 | No text annotation | ||
| J3_4V79_016 | No text annotation | ||
| J3_4V79_017 | No text annotation | ||
| J3_4V79_035 | No text annotation | ||
| J3_4V79_036 | No text annotation | ||
| J3_4V79_042 | No text annotation | ||
| J3_4V79_018 | No text annotation | ||
| J3_4V79_037 | No text annotation | ||
| J3_4V79_019 | No text annotation | ||
| J3_4V79_038 | No text annotation | ||
| J3_4V79_020 | No text annotation | ||
| J3_4V79_021 | No text annotation | ||
| J3_4V79_022 | No text annotation | ||
| J3_4V79_023 | No text annotation | ||
| J4_4V79_001 | tRNA junction | ||
| J4_4V79_002 | tRNA junction | ||
| J4_4V79_003 | No text annotation | ||
| J4_4V79_004 | No text annotation | ||
| J4_4V79_005 | No text annotation | ||
| J4_4V79_006 | No text annotation | ||
| J4_4V79_007 | No text annotation | ||
| J4_4V79_008 | No text annotation | ||
| J4_4V79_009 | No text annotation | ||
| J4_4V79_010 | No text annotation | ||
| J4_4V79_011 | No text annotation | ||
| J4_4V79_012 | No text annotation | ||
| J4_4V79_016 | No text annotation | ||
| J4_4V79_013 | No text annotation | ||
| J4_4V79_014 | No text annotation | ||
| J4_4V79_015 | No text annotation | ||
| J5_4V79_001 | No text annotation | ||
| J5_4V79_002 | No text annotation | ||
| J5_4V79_003 | No text annotation | ||
| J5_4V79_004 | No text annotation | ||
| J5_4V79_005 | No text annotation | ||
| J5_4V79_006 | No text annotation | ||
| J5_4V79_007 | No text annotation | ||
| J5_4V79_008 | No text annotation | ||
| J5_4V79_009 | No text annotation | ||
| J6_4V79_001 | No text annotation | ||
| J6_4V79_002 | No text annotation | ||
| J7_4V79_001 | No text annotation | ||
| J7_4V79_002 | No text annotation |
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