HL_4V79_014

3D structure

PDB id

4V79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases (A, C, G, U)

328C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V79_014 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.2604

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V79|1|AA|A|320
4V79|1|AA|A|321
4V79|1|AA|C|322
4V79|1|AA|U|323
4V79|1|AA|G|324
4V79|1|AA|A|325
4V79|1|AA|G|326
4V79|1|AA|A|327
4V79|1|AA|C|328
4V79|1|AA|A|329
4V79|1|AA|C|330
4V79|1|AA|G|331
4V79|1|AA|G|332
4V79|1|AA|U|333

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20