3D structure

PDB id
4V7B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Visualization of two tRNAs trapped in transit during EF-G-mediated translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7B_020 not in the Motif Atlas
Homologous match to HL_4LFB_020
Geometric discrepancy: 0.0894
The information below is about HL_4LFB_020
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

4V7B|1|AA|C|897
4V7B|1|AA|G|898
4V7B|1|AA|C|899
4V7B|1|AA|A|900
4V7B|1|AA|A|901
4V7B|1|AA|G|902

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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