4V7B Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V7B_001 | No text annotation | ||
| HL_4V7B_110 | No text annotation | ||
| HL_4V7B_002 | No text annotation | ||
| HL_4V7B_003 | GNRA | ||
| HL_4V7B_004 | GNRA | ||
| HL_4V7B_005 | UNCG | ||
| HL_4V7B_006 | GNRA related | ||
| HL_4V7B_007 | GNRA | ||
| HL_4V7B_008 | No text annotation | ||
| HL_4V7B_009 | UNCG | ||
| HL_4V7B_010 | GNRA | ||
| HL_4V7B_011 | UNCG | ||
| HL_4V7B_012 | No text annotation | ||
| HL_4V7B_013 | No text annotation | ||
| HL_4V7B_014 | GNRA-like with tWH | ||
| HL_4V7B_015 | No text annotation | ||
| HL_4V7B_016 | GNRA | ||
| HL_4V7B_017 | No text annotation | ||
| HL_4V7B_018 | No text annotation | ||
| HL_4V7B_019 | GNRA | ||
| HL_4V7B_020 | GNRA | ||
| HL_4V7B_021 | No text annotation | ||
| HL_4V7B_022 | GNRA | ||
| HL_4V7B_023 | No text annotation | ||
| HL_4V7B_024 | GNRA | ||
| HL_4V7B_025 | T-loop related | ||
| HL_4V7B_026 | No text annotation | ||
| HL_4V7B_027 | GNRA | ||
| HL_4V7B_028 | GNRA | ||
| HL_4V7B_029 | T-loop with 3 stacked bulged bases | ||
| HL_4V7B_030 | No text annotation | ||
| HL_4V7B_031 | UNCG | ||
| HL_4V7B_032 | GNRA | ||
| HL_4V7B_033 | tRNA D-loop | ||
| HL_4V7B_034 | tRNA anticodon loop | ||
| HL_4V7B_035 | T-loop with 2 stacked bulged bases | ||
| HL_4V7B_036 | No text annotation | ||
| HL_4V7B_037 | tRNA anticodon loop | ||
| HL_4V7B_038 | T-loop with 2 stacked bulged bases | ||
| HL_4V7B_039 | No text annotation | ||
| HL_4V7B_040 | No text annotation | ||
| HL_4V7B_041 | No text annotation | ||
| HL_4V7B_042 | No text annotation | ||
| HL_4V7B_043 | No text annotation | ||
| HL_4V7B_044 | No text annotation | ||
| HL_4V7B_045 | No text annotation | ||
| HL_4V7B_046 | No text annotation | ||
| HL_4V7B_047 | T-loop with 2 stacked bulged bases | ||
| HL_4V7B_048 | No text annotation | ||
| HL_4V7B_049 | T-loop with unstacked turn | ||
| HL_4V7B_050 | No text annotation | ||
| HL_4V7B_051 | Pseudoknot geometry | ||
| HL_4V7B_052 | GNRA | ||
| HL_4V7B_053 | GNRA | ||
| HL_4V7B_054 | No text annotation | ||
| HL_4V7B_055 | T-loop with 2 stacked bulged bases | ||
| HL_4V7B_056 | No text annotation | ||
| HL_4V7B_057 | GNRA | ||
| HL_4V7B_058 | No text annotation | ||
| HL_4V7B_059 | GNRA wlth tandem sheared | ||
| HL_4V7B_060 | No text annotation | ||
| HL_4V7B_061 | UNCG variation | ||
| HL_4V7B_062 | No text annotation | ||
| HL_4V7B_063 | No text annotation | ||
| HL_4V7B_064 | GNRA | ||
| HL_4V7B_065 | No text annotation | ||
| HL_4V7B_066 | No text annotation | ||
| HL_4V7B_067 | GNRA wlth tandem sheared | ||
| HL_4V7B_068 | No text annotation | ||
| HL_4V7B_069 | GNRA | ||
| HL_4V7B_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V7B_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V7B_072 | GNRA | ||
| HL_4V7B_073 | No text annotation | ||
| HL_4V7B_074 | Mini UNCG with extended bulge | ||
| HL_4V7B_075 | Pseudoknot geometry with 3' bulge | ||
| HL_4V7B_076 | Externally structured | ||
| HL_4V7B_077 | No text annotation | ||
| HL_4V7B_078 | No text annotation | ||
| HL_4V7B_079 | GNRA | ||
| HL_4V7B_080 | UNCG | ||
| HL_4V7B_081 | No text annotation | ||
| HL_4V7B_082 | No text annotation | ||
| HL_4V7B_083 | No text annotation | ||
| HL_4V7B_084 | GNRA related | ||
| HL_4V7B_085 | GNRA variation | ||
| HL_4V7B_086 | No text annotation | ||
| HL_4V7B_087 | No text annotation | ||
| HL_4V7B_088 | No text annotation | ||
| HL_4V7B_089 | No text annotation | ||
| HL_4V7B_090 | No text annotation | ||
| HL_4V7B_091 | No text annotation | ||
| HL_4V7B_092 | No text annotation | ||
| HL_4V7B_093 | No text annotation | ||
| HL_4V7B_113 | No text annotation | ||
| HL_4V7B_094 | Pseudoknot geometry | ||
| HL_4V7B_095 | GNRA | ||
| HL_4V7B_096 | GNRA | ||
| HL_4V7B_097 | No text annotation | ||
| HL_4V7B_098 | No text annotation | ||
| HL_4V7B_099 | GNRA variation | ||
| HL_4V7B_100 | No text annotation | ||
| HL_4V7B_101 | GNRA | ||
| HL_4V7B_102 | GNRA | ||
| HL_4V7B_103 | Ribsomal LSU H95 | ||
| HL_4V7B_104 | No text annotation | ||
| HL_4V7B_111 | UNCG variation | ||
| HL_4V7B_105 | Mini UNCG | ||
| HL_4V7B_106 | No text annotation | ||
| HL_4V7B_107 | GNRA | ||
| HL_4V7B_112 | No text annotation | ||
| HL_4V7B_108 | No text annotation | ||
| HL_4V7B_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V7B_001 | Single bulged G | ||
| IL_4V7B_002 | Single bulged A | ||
| IL_4V7B_003 | No text annotation | ||
| IL_4V7B_004 | Minor groove platform | ||
| IL_4V7B_005 | Multiple bulged bases | ||
| IL_4V7B_006 | Minor groove platform with extra cWW | ||
| IL_4V7B_007 | No text annotation | ||
| IL_4V7B_185 | Minor groove platform | ||
| IL_4V7B_008 | Major groove intercalation | ||
| IL_4V7B_009 | Isolated non-canonical cWW pair | ||
| IL_4V7B_010 | Minor groove platform related | ||
| IL_4V7B_011 | Isolated cWH basepair | ||
| IL_4V7B_012 | tWH-tWH-tHW-tHW | ||
| IL_4V7B_013 | Minor groove platform | ||
| IL_4V7B_014 | Kink-turn with non-sequential stacking | ||
| IL_4V7B_015 | No text annotation | ||
| IL_4V7B_016 | C-loop | ||
| IL_4V7B_017 | Single bulged U | ||
| IL_4V7B_018 | C-loop | ||
| IL_4V7B_019 | Single bulged G | ||
| IL_4V7B_020 | No text annotation | ||
| IL_4V7B_021 | No text annotation | ||
| IL_4V7B_022 | tSH-tHW-tWW | ||
| IL_4V7B_023 | No text annotation | ||
| IL_4V7B_024 | SSU/LSU pseudoknot | ||
| IL_4V7B_025 | Kink-turn related | ||
| IL_4V7B_026 | No text annotation | ||
| IL_4V7B_027 | tSH-tHW-tHS | ||
| IL_4V7B_028 | Major groove platform | ||
| IL_4V7B_029 | Major groove minor groove platform; mini C-loop | ||
| IL_4V7B_030 | No text annotation | ||
| IL_4V7B_031 | No text annotation | ||
| IL_4V7B_032 | Major groove platform; stack outside cWW | ||
| IL_4V7B_033 | Single stack bend | ||
| IL_4V7B_034 | Tandem non-canonical cWW pairs | ||
| IL_4V7B_191 | Triple non-canonical cWW pairs | ||
| IL_4V7B_035 | Kink-turn | ||
| IL_4V7B_036 | Left turn | ||
| IL_4V7B_037 | tSH-tHW-tHS | ||
| IL_4V7B_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V7B_039 | No text annotation | ||
| IL_4V7B_040 | Minor groove platform | ||
| IL_4V7B_041 | Minor groove platform | ||
| IL_4V7B_042 | Minor groove platform | ||
| IL_4V7B_043 | Single stack bend | ||
| IL_4V7B_044 | Single bulged U | ||
| IL_4V7B_045 | Isolated cWS basepair | ||
| IL_4V7B_046 | Minor groove platform | ||
| IL_4V7B_047 | Single bulged A | ||
| IL_4V7B_048 | Isolated non-canonical cWW pair | ||
| IL_4V7B_049 | Isolated non-canonical cWW pair | ||
| IL_4V7B_192 | No text annotation | ||
| IL_4V7B_050 | No text annotation | ||
| IL_4V7B_051 | No text annotation | ||
| IL_4V7B_052 | No text annotation | ||
| IL_4V7B_053 | No text annotation | ||
| IL_4V7B_054 | 180 degree turn | ||
| IL_4V7B_055 | Double sheared with non-canonical cWW | ||
| IL_4V7B_056 | No text annotation | ||
| IL_4V7B_057 | Isolated non-canonical cWW pair | ||
| IL_4V7B_058 | No text annotation | ||
| IL_4V7B_059 | No text annotation | ||
| IL_4V7B_060 | Isolated non-canonical cWW pair | ||
| IL_4V7B_061 | Decoding loop related | ||
| IL_4V7B_062 | Isolated non-canonical cWW pair | ||
| IL_4V7B_063 | Double sheared | ||
| IL_4V7B_064 | Triple sheared related | ||
| IL_4V7B_065 | Single bulged A | ||
| IL_4V7B_066 | No text annotation | ||
| IL_4V7B_067 | Isolated non-canonical cWW pair | ||
| IL_4V7B_068 | Triple sheared with non-canonical cWW | ||
| IL_4V7B_069 | Single bulged A | ||
| IL_4V7B_070 | Minor groove platform | ||
| IL_4V7B_071 | No text annotation | ||
| IL_4V7B_072 | No text annotation | ||
| IL_4V7B_073 | Single stack bend | ||
| IL_4V7B_074 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V7B_075 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V7B_076 | No text annotation | ||
| IL_4V7B_077 | Isolated non-canonical cWW pair | ||
| IL_4V7B_078 | No text annotation | ||
| IL_4V7B_079 | No text annotation | ||
| IL_4V7B_080 | No text annotation | ||
| IL_4V7B_081 | Double sheared | ||
| IL_4V7B_082 | Isolated non-canonical cWW pair | ||
| IL_4V7B_083 | AAA cross-strand stack | ||
| IL_4V7B_084 | No text annotation | ||
| IL_4V7B_085 | tHW-tHW cross-strand stack | ||
| IL_4V7B_086 | Single bulged A | ||
| IL_4V7B_087 | Single bulged G | ||
| IL_4V7B_088 | Triple sheared | ||
| IL_4V7B_089 | Major groove platform | ||
| IL_4V7B_090 | Multiple bulged bases | ||
| IL_4V7B_091 | Single stack bend | ||
| IL_4V7B_092 | 90 degree turn | ||
| IL_4V7B_186 | No text annotation | ||
| IL_4V7B_093 | Stack outside cWW | ||
| IL_4V7B_094 | Single stack bend | ||
| IL_4V7B_095 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V7B_096 | Single bulged G | ||
| IL_4V7B_187 | No text annotation | ||
| IL_4V7B_097 | C-loop with bulged stacked A's | ||
| IL_4V7B_098 | Isolated non-canonical cWW pair | ||
| IL_4V7B_099 | Double sheared with non-canonical cWW | ||
| IL_4V7B_100 | Isolated non-canonical cWW pair | ||
| IL_4V7B_101 | Single bulged C | ||
| IL_4V7B_102 | UAA/GAN | ||
| IL_4V7B_103 | SSU/LSU pseudoknot | ||
| IL_4V7B_104 | Single bulged U | ||
| IL_4V7B_105 | Kink-turn related | ||
| IL_4V7B_106 | No text annotation | ||
| IL_4V7B_107 | Isolated non-canonical cWW pair | ||
| IL_4V7B_108 | Tandem non-canonical cWW pairs | ||
| IL_4V7B_109 | Kink-turn | ||
| IL_4V7B_110 | No text annotation | ||
| IL_4V7B_111 | No text annotation | ||
| IL_4V7B_112 | No text annotation | ||
| IL_4V7B_113 | Isolated cWS basepair | ||
| IL_4V7B_114 | No text annotation | ||
| IL_4V7B_115 | Kink-turn | ||
| IL_4V7B_116 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V7B_117 | Major groove platform; stack outside cWW | ||
| IL_4V7B_118 | C-loop | ||
| IL_4V7B_119 | UAA/GAN | ||
| IL_4V7B_120 | tSH-tHW-tHS | ||
| IL_4V7B_121 | No text annotation | ||
| IL_4V7B_122 | UAA/GAN | ||
| IL_4V7B_123 | Tandem non-canonical cWW pairs | ||
| IL_4V7B_124 | tSH-tHW | ||
| IL_4V7B_125 | Single bulged U | ||
| IL_4V7B_126 | No text annotation | ||
| IL_4V7B_127 | No text annotation | ||
| IL_4V7B_128 | 180 degree turn | ||
| IL_4V7B_129 | Single bulged A | ||
| IL_4V7B_130 | UAA/GAN variation | ||
| IL_4V7B_131 | No text annotation | ||
| IL_4V7B_132 | Isolated tWW turn | ||
| IL_4V7B_133 | Major groove platform; stack outside cWW | ||
| IL_4V7B_188 | No text annotation | ||
| IL_4V7B_134 | Intercalated tWH | ||
| IL_4V7B_135 | tSH-tSH-tHH-tHS | ||
| IL_4V7B_136 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V7B_137 | Triple sheared | ||
| IL_4V7B_138 | Isolated cWH basepair | ||
| IL_4V7B_189 | Isolated non-canonical cWW pair | ||
| IL_4V7B_139 | Single bulged C | ||
| IL_4V7B_140 | Single bulged A | ||
| IL_4V7B_141 | Kink-turn related | ||
| IL_4V7B_142 | Minor groove platform, major groove intercalation | ||
| IL_4V7B_143 | Major groove intercalation | ||
| IL_4V7B_144 | Minor groove platform | ||
| IL_4V7B_190 | No text annotation | ||
| IL_4V7B_145 | UAA/GAN related | ||
| IL_4V7B_146 | Bulged stacked bases | ||
| IL_4V7B_147 | No text annotation | ||
| IL_4V7B_148 | Major groove platform | ||
| IL_4V7B_149 | Isolated non-canonical cWW pair | ||
| IL_4V7B_150 | No text annotation | ||
| IL_4V7B_151 | Single bulged U | ||
| IL_4V7B_152 | Minor groove platform | ||
| IL_4V7B_153 | Isolated tHS basepair with bulges | ||
| IL_4V7B_154 | No text annotation | ||
| IL_4V7B_155 | Single bulged U | ||
| IL_4V7B_156 | Double sheared | ||
| IL_4V7B_157 | Single bulged U | ||
| IL_4V7B_158 | Single stack bend | ||
| IL_4V7B_159 | Major groove platform | ||
| IL_4V7B_160 | Major groove platform | ||
| IL_4V7B_161 | Major groove minor groove platform with extra cWW | ||
| IL_4V7B_162 | Double sheared with non-canonical cWW | ||
| IL_4V7B_163 | Major groove platform | ||
| IL_4V7B_164 | Isolated non-canonical cWW with bulges | ||
| IL_4V7B_165 | No text annotation | ||
| IL_4V7B_166 | Major groove platform with intercalation | ||
| IL_4V7B_167 | Isolated non-canonical cWW pair | ||
| IL_4V7B_168 | Single bulged A | ||
| IL_4V7B_169 | tSH-tHS-tHW | ||
| IL_4V7B_170 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V7B_171 | C-loop | ||
| IL_4V7B_172 | UAA/GAN related, with intercalation | ||
| IL_4V7B_173 | Multiple bulged bases | ||
| IL_4V7B_174 | UAA/GAN with extra cWW | ||
| IL_4V7B_175 | Single bulged A | ||
| IL_4V7B_176 | No text annotation | ||
| IL_4V7B_177 | Major groove intercalation | ||
| IL_4V7B_178 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V7B_179 | tHS double platform | ||
| IL_4V7B_180 | Major groove intercalation | ||
| IL_4V7B_181 | No text annotation | ||
| IL_4V7B_182 | Major groove minor groove platform; mini C-loop | ||
| IL_4V7B_183 | Symmetric double minor groove platform | ||
| IL_4V7B_184 | Bacterial 5S Loop E |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_4V7B_003 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_4V7B_008 | 1/BA/2057:2064, 1/BA/2446:2453, 1/BA/2500:2506, 1/BA/2583:2588, 1/BA/2606:2611 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V7B_020 | No text annotation | ||
| J3_4V7B_021 | No text annotation | ||
| J3_4V7B_022 | No text annotation | ||
| J3_4V7B_023 | No text annotation | ||
| J3_4V7B_038 | No text annotation | ||
| J3_4V7B_024 | No text annotation | ||
| J3_4V7B_001 | No text annotation | ||
| J3_4V7B_002 | No text annotation | ||
| J3_4V7B_003 | No text annotation | ||
| J3_4V7B_004 | No text annotation | ||
| J3_4V7B_005 | No text annotation | ||
| J3_4V7B_025 | No text annotation | ||
| J3_4V7B_006 | No text annotation | ||
| J3_4V7B_007 | No text annotation | ||
| J3_4V7B_026 | No text annotation | ||
| J3_4V7B_008 | No text annotation | ||
| J3_4V7B_027 | No text annotation | ||
| J3_4V7B_009 | No text annotation | ||
| J3_4V7B_028 | No text annotation | ||
| J3_4V7B_029 | No text annotation | ||
| J3_4V7B_030 | No text annotation | ||
| J3_4V7B_031 | No text annotation | ||
| J3_4V7B_032 | No text annotation | ||
| J3_4V7B_010 | No text annotation | ||
| J3_4V7B_011 | No text annotation | ||
| J3_4V7B_033 | No text annotation | ||
| J3_4V7B_012 | No text annotation | ||
| J3_4V7B_013 | No text annotation | ||
| J3_4V7B_014 | No text annotation | ||
| J3_4V7B_034 | No text annotation | ||
| J3_4V7B_035 | No text annotation | ||
| J3_4V7B_015 | No text annotation | ||
| J3_4V7B_036 | No text annotation | ||
| J3_4V7B_016 | No text annotation | ||
| J3_4V7B_017 | No text annotation | ||
| J3_4V7B_037 | No text annotation | ||
| J3_4V7B_018 | No text annotation | ||
| J3_4V7B_019 | No text annotation | ||
| J4_4V7B_001 | No text annotation | ||
| J4_4V7B_002 | No text annotation | ||
| J4_4V7B_004 | tRNA junction | ||
| J4_4V7B_005 | tRNA junction | ||
| J4_4V7B_006 | No text annotation | ||
| J4_4V7B_007 | No text annotation | ||
| J4_4V7B_008 | No text annotation | ||
| J4_4V7B_009 | No text annotation | ||
| J4_4V7B_010 | No text annotation | ||
| J4_4V7B_011 | No text annotation | ||
| J4_4V7B_012 | No text annotation | ||
| J4_4V7B_013 | No text annotation | ||
| J4_4V7B_014 | No text annotation | ||
| J4_4V7B_015 | No text annotation | ||
| J4_4V7B_016 | No text annotation | ||
| J5_4V7B_001 | No text annotation | ||
| J5_4V7B_002 | No text annotation | ||
| J5_4V7B_003 | No text annotation | ||
| J5_4V7B_004 | No text annotation | ||
| J5_4V7B_005 | No text annotation | ||
| J5_4V7B_006 | No text annotation | ||
| J5_4V7B_007 | No text annotation | ||
| J5_4V7B_009 | No text annotation | ||
| J6_4V7B_001 | No text annotation | ||
| J6_4V7B_002 | No text annotation | ||
| J7_4V7B_001 | No text annotation | ||
| J7_4V7B_002 | No text annotation |
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