HL_4V7B_035

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

G(5MU)UCAAAUC

Length

9 nucleotides

Bulged bases

4V7B|1|AV|U|55

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7B_035 not in the Motif Atlas

Homologous match to HL_5AH5_008

Geometric discrepancy: 0.1229

The information below is about HL_5AH5_008

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V7B|1|AV|G|53
4V7B|1|AV|5MU|54
4V7B|1|AV|U|55
4V7B|1|AV|C|56
4V7B|1|AV|A|57
4V7B|1|AV|A|58
4V7B|1|AV|A|59
4V7B|1|AV|U|60
4V7B|1|AV|C|61

Current chains

Chain AV

modified formyl-methionine specific initiator transfer RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5

Chain BM

50S ribosomal protein L16