3D structure

PDB id
4V7B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Visualization of two tRNAs trapped in transit during EF-G-mediated translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CUUAGAAGCAG
Length
11 nucleotides
Bulged bases
4V7B|1|BA|A|1070
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7B_066 not in the Motif Atlas
Homologous match to HL_5J7L_161
Geometric discrepancy: 0.3626
The information below is about HL_5J7L_161
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19210.3
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

4V7B|1|BA|C|1064
4V7B|1|BA|U|1065
4V7B|1|BA|U|1066
4V7B|1|BA|A|1067
4V7B|1|BA|G|1068
4V7B|1|BA|A|1069
4V7B|1|BA|A|1070
4V7B|1|BA|G|1071
4V7B|1|BA|C|1072
4V7B|1|BA|A|1073
4V7B|1|BA|G|1074

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AY
Elongation Factor G
Chain BI
50S ribosomal protein L11
Chain BM
50S ribosomal protein L16

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