HL_4V7B_066

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4V7B|1|BA|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7B_066 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3626

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7B|1|BA|C|1064
4V7B|1|BA|U|1065
4V7B|1|BA|U|1066
4V7B|1|BA|A|1067
4V7B|1|BA|G|1068
4V7B|1|BA|A|1069
4V7B|1|BA|A|1070
4V7B|1|BA|G|1071
4V7B|1|BA|C|1072
4V7B|1|BA|A|1073
4V7B|1|BA|G|1074

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AY

Elongation Factor G

Chain BI

50S ribosomal protein L11

Chain BM

50S ribosomal protein L16