HL_4V7C_035

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

4V7C|1|AV|C|56, 4V7C|1|AV|G|57

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7C_035 not in the Motif Atlas

Homologous match to HL_5B63_004

Geometric discrepancy: 0.2932

The information below is about HL_5B63_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

4V7C|1|AV|G|53
4V7C|1|AV|U|54
4V7C|1|AV|U|55
4V7C|1|AV|C|56
4V7C|1|AV|G|57
4V7C|1|AV|A|58
4V7C|1|AV|U|59
4V7C|1|AV|U|60
4V7C|1|AV|C|61

Current chains

Chain AV

tRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BO

50S ribosomal protein L16