4V7C Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V7C_001 | 1/AA/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_4V7C_110 | 1/AA/77:92 | No text annotation | ||
| HL_4V7C_002 | 1/AA/79:90 | No text annotation | ||
| HL_4V7C_003 | 1/AA/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
| HL_4V7C_004 | 1/AA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
| HL_4V7C_112 | 1/AA/203:214 | No text annotation | ||
| HL_4V7C_005 | 1/AA/206:213 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_4V7C_006 | 1/AA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_4V7C_007 | 1/AA/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_4V7C_008 | 1/AA/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_4V7C_009 | 1/AA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_4V7C_010 | 1/AA/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.8 | |
| HL_4V7C_011 | 1/AA/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4V7C_137 | 1/AA/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 HL_81538.2 | |
| HL_4V7C_116 | 1/AA/507:524 | No text annotation | ||
| HL_4V7C_013 | 1/AA/521:528 | GNRA with extra near cWW | geometric HL_6CZR_215 NA | |
| HL_4V7C_014 | 1/AA/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 HL_10453.3 | |
| HL_4V7C_015 | 1/AA/689:698 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_4V7C_016 | 1/AA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
| HL_4V7C_017 | 1/AA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4V7C_018 | 1/AA/840:846 | No text annotation | ||
| HL_4V7C_019 | 1/AA/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.8 | |
| HL_4V7C_020 | 1/AA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_4V7C_021 | 1/AA/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_4V7C_022 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_4V7C_023 | 1/AA/1028:1033 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_4V7C_024 | 1/AA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_4V7C_025 | 1/AA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4V7C_117 | 1/AA/1129:1143 | No text annotation | ||
| HL_4V7C_026 | 1/AA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4V7C_027 | 1/AA/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_4V7C_028 | 1/AA/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.8 | |
| HL_4V7C_029 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V7C_118 | 1/AA/1356:1366 | No text annotation | homologous HL_5J7L_029 HL_06226.4 | |
| HL_4V7C_031 | 1/AA/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4V7C_032 | 1/AA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_4V7C_033 | 1/AV/13:22 | No text annotation | homologous HL_6ORD_035 NA | |
| HL_4V7C_034 | 1/AV/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 HL_06059.7 | |
| HL_4V7C_035 | 1/AV/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5B63_004 HL_28252.9 | |
| HL_4V7C_036 | 1/AW/13:22 | No text annotation | homologous HL_3KFU_004 NA | |
| HL_4V7C_120 | 1/AW/31:39 | tRNA anticodon loop | homologous HL_4V90_033 HL_06059.7 | |
| HL_4V7C_038 | 1/AW/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4LCK_003 HL_28252.9 | |
| HL_4V7C_039 | 1/BA/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_4V7C_040 | 1/BA/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_4V7C_041 | 1/BA/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_4V7C_042 | 1/BA/137:142 | No text annotation | homologous HL_5J7L_137 HL_32392.1 | |
| HL_4V7C_043 | 1/BA/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_4V7C_121 | 1/BA/188:208 | No text annotation | ||
| HL_4V7C_044 | 1/BA/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4V7C_045 | 1/BA/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_4V7C_046 | 1/BA/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
| HL_4V7C_047 | 1/BA/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_4V7C_048 | 1/BA/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_4V7C_049 | 1/BA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4V7C_138 | 1/BA/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_4V7C_051 | 1/BA/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_4V7C_052 | 1/BA/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
| HL_4V7C_053 | 1/BA/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
| HL_4V7C_054 | 1/BA/543:550 | No text annotation | homologous HL_5J7L_149 HL_09452.1 | |
| HL_4V7C_122 | 1/BA/564:577 | No text annotation | ||
| HL_4V7C_055 | 1/BA/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.9 | |
| HL_4V7C_056 | 1/BA/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_4V7C_057 | 1/BA/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
| HL_4V7C_058 | 1/BA/641:647 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
| HL_4V7C_059 | 1/BA/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_4V7C_060 | 1/BA/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_4V7C_061 | 1/BA/779:785 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_4V7C_062 | 1/BA/826:831 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_4V7C_139 | 1/BA/875:902 | No text annotation | ||
| HL_4V7C_063 | 1/BA/882:894 | No text annotation | ||
| HL_4V7C_064 | 1/BA/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.8 | |
| HL_4V7C_065 | 1/BA/978:985 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
| HL_4V7C_066 | 1/BA/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_4V7C_067 | 1/BA/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_4V7C_140 | 1/BA/1168:1181 | No text annotation | ||
| HL_4V7C_069 | 1/BA/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.8 | |
| HL_4V7C_070 | 1/BA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.9 | |
| HL_4V7C_071 | 1/BA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_4V7C_072 | 1/BA/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_4V7C_073 | 1/BA/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_4V7C_126 | 1/BA/1450:1461 | UNCG variation | geometric HL_5J7L_200 HL_08100.1 | |
| HL_4V7C_074 | 1/BA/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
| HL_4V7C_075 | 1/BA/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_4V7C_076 | 1/BA/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_4V7C_077 | 1/BA/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_4V7C_078 | 1/BA/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_4V7C_079 | 1/BA/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.8 | |
| HL_4V7C_128 | 1/BA/1686:1702 | No text annotation | ||
| HL_4V7C_080 | 1/BA/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_4V7C_081 | 1/BA/1727:1733 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_4V7C_082 | 1/BA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V7C_083 | 1/BA/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_4V7C_084 | 1/BA/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_4V7C_129 | 1/BA/1864:1878 | No text annotation | ||
| HL_4V7C_085 | 1/BA/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.8 | |
| HL_4V7C_086 | 1/BA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V7C_141 | 1/BA/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_20167.2 | |
| HL_4V7C_088 | 1/BA/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.3 | |
| HL_4V7C_089 | 1/BA/2143:2148 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_4V7C_090 | 1/BA/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_4V7C_091 | 1/BA/2248:2256 | No text annotation | homologous HL_5J7L_186 HL_85367.2 | |
| HL_4V7C_092 | 1/BA/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
| HL_4V7C_093 | 1/BA/2303:2313 | No text annotation | homologous HL_7RQB_055 NA | |
| HL_4V7C_131 | 1/BA/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_4V7C_095 | 1/BA/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.8 | |
| HL_4V7C_096 | 1/BA/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.8 | |
| HL_4V7C_097 | 1/BA/2404:2413 | No text annotation | geometric HL_5J7L_192 HL_53454.2 | |
| HL_4V7C_098 | 1/BA/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_4V7C_099 | 1/BA/2528:2535 | GNRA variation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_4V7C_100 | 1/BA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V7C_101 | 1/BA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V7C_102 | 1/BA/2658:2663 | GNRA | geometric HL_5X2G_001 HL_37824.8 | |
| HL_4V7C_103 | 1/BA/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_4V7C_104 | 1/BA/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
| HL_4V7C_105 | 1/BA/2795:2801 | UNCG variation | homologous HL_5J7L_200 HL_08100.1 | |
| HL_4V7C_106 | 1/BA/2819:2827 | No text annotation | geometric HL_5J7L_201 HL_64690.6 | |
| HL_4V7C_107 | 1/BA/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.8 | |
| HL_4V7C_108 | 1/BB/38:44 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_4V7C_109 | 1/BB/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V7C_111 | GNRA with extra near cWW | ||
| HL_4V7C_113 | No text annotation | ||
| HL_4V7C_114 | No text annotation | ||
| HL_4V7C_115 | tRNA anticodon loop | ||
| HL_4V7C_012 | No text annotation | ||
| HL_4V7C_030 | No text annotation | ||
| HL_4V7C_119 | No text annotation | ||
| HL_4V7C_037 | No text annotation | ||
| HL_4V7C_050 | No text annotation | ||
| HL_4V7C_123 | No text annotation | ||
| HL_4V7C_124 | No text annotation | ||
| HL_4V7C_125 | No text annotation | ||
| HL_4V7C_068 | No text annotation | ||
| HL_4V7C_127 | No text annotation | ||
| HL_4V7C_087 | No text annotation | ||
| HL_4V7C_130 | No text annotation | ||
| HL_4V7C_094 | No text annotation | ||
| HL_4V7C_132 | GNRA with extra cWW | ||
| HL_4V7C_133 | tRNA anticodon loop | ||
| HL_4V7C_134 | No text annotation | ||
| HL_4V7C_135 | No text annotation | ||
| HL_4V7C_136 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V7C_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.14 | |
| IL_4V7C_203 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_4V7C_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_4V7C_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4V7C_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.5 | |
| IL_4V7C_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW | geometric IL_5J7L_006 IL_90351.1 | |
| IL_4V7C_007 | 1/AA/69:73, 1/AA/97:99 | No text annotation | ||
| IL_4V7C_204 | 1/AA/69:75, 1/AA/95:99 | No text annotation | ||
| IL_4V7C_008 | 1/AA/75:76, 1/AA/93:95 | Major groove intercalation | geometric IL_5J7L_352 IL_66635.5 | |
| IL_4V7C_010 | 1/AA/127:132, 1/AA/230:234 | Partly complementary | geometric IL_7VYX_008 IL_49751.4 | |
| IL_4V7C_252 | 1/AA/128:136, 1/AA/227:233 | No text annotation | ||
| IL_4V7C_011 | 1/AA/132:137, 1/AA/226:230 | No text annotation | ||
| IL_4V7C_012 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_4V7C_253 | 1/AA/144:153, 1/AA/168:178 | No text annotation | ||
| IL_4V7C_013 | 1/AA/147:154, 1/AA/167:175 | No text annotation | ||
| IL_4V7C_014 | 1/AA/203:206, 1/AA/213:214 | No text annotation | ||
| IL_4V7C_015 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_4V7C_254 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_6CZR_405 NA | |
| IL_4V7C_255 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_5J7L_016 IL_03109.3 | |
| IL_4V7C_018 | 1/AA/371:375, 1/AA/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_4V7C_208 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | homologous IL_6CZR_358 NA | |
| IL_4V7C_021 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V7C_022 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_4V7C_023 | 1/AA/450:454, 1/AA/479:483 | No text annotation | ||
| IL_4V7C_256 | 1/AA/450:455, 1/AA/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
| IL_4V7C_024 | 1/AA/454:458, 1/AA/474:479 | No text annotation | ||
| IL_4V7C_025 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4V7C_210 | 1/AA/504:505, 1/AA/526:541 | No text annotation | ||
| IL_4V7C_026 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | homologous IL_5J7L_025 IL_54177.4 | |
| IL_4V7C_027 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_4V7C_028 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_4V7C_029 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_4V7C_257 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4V7C_031 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4V7C_032 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_4V7C_033 | 1/AA/659:660, 1/AA/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_4V7C_034 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_4V7C_258 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | geometric IL_6CZR_409 NA | |
| IL_4V7C_035 | 1/AA/683:688, 1/AA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V7C_036 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4V7C_037 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4V7C_038 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_4V7C_259 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.7 | |
| IL_4V7C_039 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.14 | |
| IL_4V7C_041 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4V7C_042 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_5J7L_042 IL_51454.3 | |
| IL_4V7C_215 | 1/AA/955:984, 1/AA/1221:1225 | No text annotation | ||
| IL_4V7C_044 | 1/AA/993:998, 1/AA/1043:1045 | Multiple bulged bases | geometric IL_5TBW_136 NA | |
| IL_4V7C_045 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_4V7C_047 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_4V7C_217 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_4V7C_049 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4V7C_050 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A | homologous IL_5J7L_049 IL_31462.7 | |
| IL_4V7C_051 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_4V7C_220 | 1/AA/1073:1074, 1/AA/1083:1102 | No text annotation | ||
| IL_4V7C_260 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_4V7C_055 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform | geometric IL_5J7L_052 IL_15052.4 | |
| IL_4V7C_056 | 1/AA/1158:1162, 1/AA/1174:1181 | No text annotation | ||
| IL_4V7C_221 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_4V7C_058 | 1/AA/1255:1258, 1/AA/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_4V7C_059 | 1/AA/1259:1263, 1/AA/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 IL_17948.2 | |
| IL_4V7C_060 | 1/AA/1303:1309, 1/AA/1328:1334 | No text annotation | ||
| IL_4V7C_062 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4V7C_063 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V7C_064 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_4V7C_065 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4V7C_066 | 1/AA/1412:1415, 1/AA/1485:1488 | Tandem non-canonical cWW pairs | homologous IL_6CZR_168 NA | |
| IL_4V7C_222 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_4V7C_068 | 1/AA/1429:1435, 1/AA/1466:1471 | No text annotation | ||
| IL_4V7C_069 | 1/AA/1440:1442, 1/AA/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.7 | |
| IL_4V7C_070 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_4V7C_075 | 1/BA/36:37, 1/BA/442:444 | Single bulged A | geometric IL_7RQB_002 NA | |
| IL_4V7C_077 | 1/BA/42:44, 1/BA/434:437 | Minor groove platform with extra cWW | homologous IL_4WF9_003 IL_90351.1 | |
| IL_4V7C_078 | 1/BA/81:85, 1/BA/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_4V7C_079 | 1/BA/183:184, 1/BA/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_4V7C_080 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 IL_04346.10 | |
| IL_4V7C_081 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_4V7C_083 | 1/BA/274:281, 1/BA/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4V7C_085 | 1/BA/293:295, 1/BA/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_4V7C_086 | 1/BA/481:484, 1/BA/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_4V7C_087 | 1/BA/536:539, 1/BA/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_4V7C_088 | 1/BA/564:566, 1/BA/575:577 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 IL_07785.1 | |
| IL_4V7C_090 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_4V7C_091 | 1/BA/672:674, 1/BA/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_4V7C_092 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_4V7C_093 | 1/BA/697:698, 1/BA/763:765 | Single bulged A | geometric IL_5J7L_261 IL_31462.7 | |
| IL_4V7C_094 | 1/BA/702:703, 1/BA/728:730 | Single bulged G | homologous IL_4WF9_023 IL_00225.14 | |
| IL_4V7C_095 | 1/BA/703:707, 1/BA/724:728 | Triple sheared | geometric IL_4V9F_027 IL_50730.2 | |
| IL_4V7C_096 | 1/BA/738:740, 1/BA/757:758 | Major groove platform | homologous IL_4WF9_026 IL_48076.6 | |
| IL_4V7C_097 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.2 | |
| IL_4V7C_098 | 1/BA/844:847, 1/BA/933:934 | 90 degree turn | homologous IL_5J7L_267 IL_90729.1 | |
| IL_4V7C_226 | 1/BA/844:848, 1/BA/930:934 | No text annotation | geometric IL_5J7L_399 IL_96236.1 | |
| IL_4V7C_099 | 1/BA/847:848, 1/BA/930:933 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_4V7C_100 | 1/BA/850:851, 1/BA/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_4V7C_101 | 1/BA/856:862, 1/BA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_4V7C_261 | 1/BA/856:863, 1/BA/913:921 | No text annotation | ||
| IL_4V7C_102 | 1/BA/862:863, 1/BA/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.14 | |
| IL_4V7C_103 | 1/BA/863:868, 1/BA/909:913 | No text annotation | ||
| IL_4V7C_262 | 1/BA/864:872, 1/BA/905:912 | No text annotation | ||
| IL_4V7C_104 | 1/BA/870:872, 1/BA/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_4V7C_105 | 1/BA/875:880, 1/BA/897:902 | No text annotation | ||
| IL_4V7C_106 | 1/BA/880:882, 1/BA/894:897 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 IL_57744.1 | |
| IL_4V7C_107 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_4V7C_108 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_4V7C_109 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_4V7C_229 | 1/BA/1004:1013, 1/BA/1149:1151 | Isolated non-canonical cWW pair | geometric IL_3CUL_008 IL_87907.2 | |
| IL_4V7C_110 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_4V7C_111 | 1/BA/1017:1024, 1/BA/1140:1145 | No text annotation | ||
| IL_4V7C_230 | 1/BA/1018:1030, 1/BA/1124:1144 | No text annotation | ||
| IL_4V7C_112 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_4V7C_113 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_4V7C_114 | 1/BA/1038:1041, 1/BA/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_4V7C_115 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation | homologous IL_5J7L_285 IL_92446.2 | |
| IL_4V7C_116 | 1/BA/1087:1091, 1/BA/1100:1102 | No text annotation | homologous IL_7RQB_044 NA | |
| IL_4V7C_117 | 1/BA/1196:1199, 1/BA/1246:1250 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_85033.2 | |
| IL_4V7C_118 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4V7C_119 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_4V7C_120 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_4V7C_121 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V7C_263 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4V7C_123 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN | geometric IL_7A0S_048 IL_89021.2 | |
| IL_4V7C_125 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS | geometric IL_5J7L_293 IL_17136.7 | |
| IL_4V7C_128 | 1/BA/1414:1417, 1/BA/1581:1588 | No text annotation | ||
| IL_4V7C_233 | 1/BA/1414:1421, 1/BA/1577:1588 | No text annotation | ||
| IL_4V7C_129 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN | geometric IL_7A0S_033 IL_38507.2 | |
| IL_4V7C_264 | 1/BA/1432:1435, 1/BA/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_4V7C_131 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_4V7C_134 | 1/BA/1450:1451, 1/BA/1459:1461 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_4V7C_135 | 1/BA/1468:1471, 1/BA/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_4V7C_265 | 1/BA/1474:1478, 1/BA/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_4V7C_137 | 1/BA/1480:1482, 1/BA/1507:1511 | No text annotation | ||
| IL_4V7C_138 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.7 | |
| IL_4V7C_139 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V7C_140 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn | homologous IL_7A0S_060 IL_67095.2 | |
| IL_4V7C_141 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_50694.7 | |
| IL_4V7C_142 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_4V7C_143 | 1/BA/1712:1718, 1/BA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_4V7C_144 | 1/BA/1720:1724, 1/BA/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_4V7C_145 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V7C_146 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_4V7C_147 | 1/BA/1837:1840, 1/BA/1902:1903 | Minor groove platform, major groove intercalation | geometric IL_4V9F_066 IL_95583.2 | |
| IL_4V7C_266 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_82107.5 | |
| IL_4V7C_267 | 1/BA/1846:1849, 1/BA/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_072 IL_68140.4 | |
| IL_4V7C_240 | 1/BA/1851:1860, 1/BA/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_4V7C_151 | 1/BA/1864:1867, 1/BA/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 IL_77691.5 | |
| IL_4V7C_152 | 1/BA/1933:1934, 1/BA/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_4V7C_153 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_4V7C_155 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_4V7C_156 | 1/BA/2054:2056, 1/BA/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_4V7C_158 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U | geometric IL_4V9F_074 IL_89505.4 | |
| IL_4V7C_268 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
| IL_4V7C_161 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_4V7C_162 | 1/BA/2085:2087, 1/BA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
| IL_4V7C_269 | 1/BA/2103:2106, 1/BA/2183:2186 | Other IL | homologous IL_5J7L_327 IL_43644.1 | |
| IL_4V7C_270 | 1/BA/2108:2120, 1/BA/2178:2181 | No text annotation | ||
| IL_4V7C_243 | 1/BA/2123:2128, 1/BA/2160:2175 | Kink-turn | homologous IL_5J7L_390 IL_06029.1 | |
| IL_4V7C_168 | 1/BA/2124:2128, 1/BA/2160:2174 | Kink-turn related | homologous IL_5J7L_329 IL_87290.1 | |
| IL_4V7C_271 | 1/BA/2129:2136, 1/BA/2155:2159 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_4V7C_172 | 1/BA/2202:2204, 1/BA/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_4V7C_174 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_4V7C_175 | 1/BA/2401:2403, 1/BA/2414:2415 | No text annotation | ||
| IL_4V7C_176 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_4V7C_272 | 1/BA/2453:2455, 1/BA/2496:2500 | No text annotation | ||
| IL_4V7C_177 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform | homologous IL_4WF9_090 IL_48076.6 | |
| IL_4V7C_273 | 1/BA/2457:2461, 1/BA/2489:2494 | No text annotation | ||
| IL_4V7C_179 | 1/BA/2466:2470, 1/BA/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4V7C_180 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_4V7C_181 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4V7C_182 | 1/BA/2512:2513, 1/BA/2571:2574 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_4V7C_183 | 1/BA/2522:2523, 1/BA/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_4V7C_185 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V7C_186 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_4V7C_187 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
| IL_4V7C_274 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_4V7C_189 | 1/BA/2687:2691, 1/BA/2718:2722 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_4V7C_190 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_4V7C_191 | 1/BA/2736:2742, 1/BA/2762:2768 | No text annotation | ||
| IL_4V7C_275 | 1/BA/2737:2744, 1/BA/2760:2767 | No text annotation | ||
| IL_4V7C_193 | 1/BA/2806:2811, 1/BA/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_4V7C_195 | 1/BA/2838:2839, 1/BA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V7C_196 | 1/BA/2843:2846, 1/BA/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_4V7C_197 | 1/BA/2847:2852, 1/BA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V7C_198 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.7 | |
| IL_4V7C_199 | 1/BB/23:28, 1/BB/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_4V7C_276 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_68140.4 | |
| IL_4V7C_277 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_4V7C_201 | 1/BB/71:79, 1/BB/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V7C_202 | Isolated non-canonical cWW pair | ||
| IL_4V7C_002 | Isolated non-canonical cWW pair | ||
| IL_4V7C_009 | No text annotation | ||
| IL_4V7C_205 | No text annotation | ||
| IL_4V7C_206 | No text annotation | ||
| IL_4V7C_207 | No text annotation | ||
| IL_4V7C_016 | No text annotation | ||
| IL_4V7C_017 | No text annotation | ||
| IL_4V7C_019 | Single bulged G, near cWW | ||
| IL_4V7C_020 | No text annotation | ||
| IL_4V7C_209 | No text annotation | ||
| IL_4V7C_211 | Major groove minor groove platform with extra cWW | ||
| IL_4V7C_030 | No text annotation | ||
| IL_4V7C_212 | No text annotation | ||
| IL_4V7C_213 | Partly complementary | ||
| IL_4V7C_214 | No text annotation | ||
| IL_4V7C_040 | Isolated non-canonical cWW pair | ||
| IL_4V7C_043 | Isolated non-canonical cWW pair | ||
| IL_4V7C_046 | Isolated non-canonical cWW pair | ||
| IL_4V7C_216 | No text annotation | ||
| IL_4V7C_048 | Tandem non-canonical cWW pairs | ||
| IL_4V7C_218 | No text annotation | ||
| IL_4V7C_219 | Minor groove platform with extra cWW | ||
| IL_4V7C_052 | Isolated non-canonical cWW pair | ||
| IL_4V7C_053 | Isolated non-canonical cWW pair | ||
| IL_4V7C_054 | No text annotation | ||
| IL_4V7C_057 | No text annotation | ||
| IL_4V7C_061 | Isolated non-canonical cWW pair | ||
| IL_4V7C_067 | No text annotation | ||
| IL_4V7C_223 | No text annotation | ||
| IL_4V7C_071 | No text annotation | ||
| IL_4V7C_072 | Isolated non-canonical cWW pair | ||
| IL_4V7C_073 | Isolated non-canonical cWW pair | ||
| IL_4V7C_074 | Isolated non-canonical cWW pair | ||
| IL_4V7C_076 | Isolated non-canonical cWW pair | ||
| IL_4V7C_082 | Isolated non-canonical cWW pair | ||
| IL_4V7C_224 | No text annotation | ||
| IL_4V7C_084 | Isolated non-canonical cWW pair | ||
| IL_4V7C_089 | No text annotation | ||
| IL_4V7C_225 | No text annotation | ||
| IL_4V7C_227 | No text annotation | ||
| IL_4V7C_228 | No text annotation | ||
| IL_4V7C_231 | Tandem non-canonical cWW pairs | ||
| IL_4V7C_122 | No text annotation | ||
| IL_4V7C_124 | Isolated cWH basepair | ||
| IL_4V7C_232 | No text annotation | ||
| IL_4V7C_126 | No text annotation | ||
| IL_4V7C_127 | Isolated non-canonical cWW pair | ||
| IL_4V7C_130 | No text annotation | ||
| IL_4V7C_132 | No text annotation | ||
| IL_4V7C_133 | Isolated non-canonical cWW pair | ||
| IL_4V7C_234 | No text annotation | ||
| IL_4V7C_136 | No text annotation | ||
| IL_4V7C_235 | No text annotation | ||
| IL_4V7C_236 | No text annotation | ||
| IL_4V7C_237 | No text annotation | ||
| IL_4V7C_238 | No text annotation | ||
| IL_4V7C_148 | No text annotation | ||
| IL_4V7C_149 | No text annotation | ||
| IL_4V7C_239 | No text annotation | ||
| IL_4V7C_150 | Isolated non-canonical cWW pair | ||
| IL_4V7C_154 | Isolated non-canonical cWW pair | ||
| IL_4V7C_157 | No text annotation | ||
| IL_4V7C_241 | Tandem non-canonical cWW pairs | ||
| IL_4V7C_159 | Isolated non-canonical cWW pair | ||
| IL_4V7C_160 | No text annotation | ||
| IL_4V7C_163 | Isolated cWH basepair | ||
| IL_4V7C_164 | Tandem non-canonical cWW pairs | ||
| IL_4V7C_165 | No text annotation | ||
| IL_4V7C_242 | No text annotation | ||
| IL_4V7C_166 | No text annotation | ||
| IL_4V7C_167 | No text annotation | ||
| IL_4V7C_169 | No text annotation | ||
| IL_4V7C_244 | No text annotation | ||
| IL_4V7C_170 | Isolated non-canonical cWW pair | ||
| IL_4V7C_171 | Isolated non-canonical cWW pair | ||
| IL_4V7C_173 | No text annotation | ||
| IL_4V7C_245 | No text annotation | ||
| IL_4V7C_178 | No text annotation | ||
| IL_4V7C_246 | Tandem non-canonical cWW pairs | ||
| IL_4V7C_247 | No text annotation | ||
| IL_4V7C_248 | No text annotation | ||
| IL_4V7C_184 | Isolated non-canonical cWW pair | ||
| IL_4V7C_188 | No text annotation | ||
| IL_4V7C_249 | No text annotation | ||
| IL_4V7C_192 | No text annotation | ||
| IL_4V7C_194 | No text annotation | ||
| IL_4V7C_250 | No text annotation | ||
| IL_4V7C_200 | No text annotation | ||
| IL_4V7C_251 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V7C_018 | 1/AA/46:52, 1/AA/359:369, 1/AA/392:395 | No text annotation | ||
| J3_4V7C_019 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_4V7C_039 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_4V7C_040 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_4V7C_001 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_4V7C_041 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_5J7L_052 J3_25303.4 | |
| J3_4V7C_002 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_4V7C_003 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | ||
| J3_4V7C_042 | 1/AA/990:999, 1/AA/1041:1047, 1/AA/1210:1215 | No text annotation | ||
| J3_4V7C_004 | 1/AA/1002:1006, 1/AA/1023:1028, 1/AA/1033:1038 | No text annotation | ||
| J3_4V7C_043 | 1/AA/1003:1008, 1/AA/1021:1028, 1/AA/1033:1037 | No text annotation | ||
| J3_4V7C_005 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4V7C_006 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation | geometric J3_5J7L_010 J3_82365.4 | |
| J3_4V7C_044 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_4V7C_007 | 1/BA/24:31, 1/BA/474:481, 1/BA/509:516 | No text annotation | ||
| J3_4V7C_045 | 1/BA/24:31, 1/BA/474:484, 1/BA/496:516 | No text annotation | ||
| J3_4V7C_029 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_4V7C_046 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_4V7C_047 | 1/BA/297:301, 1/BA/316:325, 1/BA/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_4V7C_009 | 1/BA/682:689, 1/BA/773:775, 1/BA/791:795 | No text annotation | ||
| J3_4V7C_048 | 1/BA/683:689, 1/BA/773:777, 1/BA/787:794 | No text annotation | ||
| J3_4V7C_010 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V7C_011 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_4V7C_012 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_4V7C_049 | 1/BA/1344:1349, 1/BA/1382:1385, 1/BA/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_4V7C_033 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_4V7C_013 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 J3_89368.5 | |
| J3_4V7C_035 | 1/BA/2282:2284, 1/BA/2384:2395, 1/BA/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_4V7C_014 | 1/BA/2295:2299, 1/BA/2317:2323, 1/BA/2332:2337 | No text annotation | ||
| J3_4V7C_050 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation | homologous J3_4WF9_009 J3_32601.5 | |
| J3_4V7C_051 | 1/BA/2812:2815, 1/BA/2831:2836, 1/BA/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_4V7C_017 | 1/BB/10:16, 1/BB/68:70, 1/BB/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J3_4V7C_052 | 1/BB/10:18, 1/BB/65:70, 1/BB/106:110 | No text annotation | ||
| J4_4V7C_016 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_4V7C_017 | 1/AA/142:144, 1/AA/178:184, 1/AA/193:198, 1/AA/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_4V7C_018 | 1/AA/569:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:881 | No text annotation | ||
| J4_4V7C_019 | 1/AA/943:946, 1/AA/1235:1241, 1/AA/1296:1308, 1/AA/1329:1340 | No text annotation | ||
| J4_4V7C_020 | 1/AV/7:10, 1/AV/25:28, 1/AV/42:49, 1/AV/65:66 | tRNA junction | homologous J4_5WWT_001 J4_65285.1 | |
| J4_4V7C_006 | 1/AW/7:10, 1/AW/25:27, 1/AW/43:49, 1/AW/65:66 | No text annotation | homologous J4_4WT8_031 NA | |
| J4_4V7C_021 | 1/BA/268:273, 1/BA/364:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | ||
| J4_4V7C_008 | 1/BA/601:604, 1/BA/624:628, 1/BA/635:638, 1/BA/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4V7C_022 | 1/BA/1270:1276, 1/BA/1294:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_4V7C_023 | 1/BA/1310:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_4V7C_024 | 1/BA/1444:1445, 1/BA/1466:1467, 1/BA/1525:1529, 1/BA/1542:1547 | No text annotation | homologous J4_7A0S_007 J4_91813.1 | |
| J4_4V7C_012 | 1/BA/1772:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4V7C_025 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation | homologous J4_5J7L_026 J4_93343.1 | |
| J4_4V7C_026 | 1/BA/2285:2289, 1/BA/2343:2353, 1/BA/2364:2372, 1/BA/2381:2383 | No text annotation | ||
| J4_4V7C_027 | 1/BA/2643:2646, 1/BA/2674:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_4V7C_009 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_4V7C_010 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_4V7C_003 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_4V7C_011 | 1/BA/584:589, 1/BA/668:671, 1/BA/809:812, 1/BA/1195:1199, 1/BA/1246:1256 | No text annotation | ||
| J5_4V7C_005 | 1/BA/1666:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1994 | No text annotation | ||
| J5_4V7C_006 | 1/BA/1669:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1993 | No text annotation | ||
| J5_4V7C_012 | 1/BA/2057:2064, 1/BA/2446:2453, 1/BA/2500:2508, 1/BA/2580:2588, 1/BA/2606:2611 | No text annotation | ||
| J5_4V7C_013 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2282, 1/BA/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J7_4V7C_001 | 1/BA/817:822, 1/BA/835:838, 1/BA/940:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation | ||
| J8_4V7C_001 | 1/BA/8:15, 1/BA/525:531, 1/BA/2018:2023, 1/BA/2040:2043, 1/BA/2625:2630, 1/BA/2788:2791, 1/BA/2805:2806, 1/BA/2892:2895 | No text annotation | ||
| J9_4V7C_002 | 1/BA/45:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:183, 1/BA/214:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:433 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V7C_020 | No text annotation | ||
| J3_4V7C_021 | No text annotation | ||
| J3_4V7C_022 | No text annotation | ||
| J3_4V7C_023 | No text annotation | ||
| J3_4V7C_024 | No text annotation | ||
| J3_4V7C_025 | No text annotation | ||
| J3_4V7C_026 | No text annotation | ||
| J3_4V7C_027 | No text annotation | ||
| J3_4V7C_028 | No text annotation | ||
| J3_4V7C_008 | No text annotation | ||
| J3_4V7C_030 | No text annotation | ||
| J3_4V7C_031 | No text annotation | ||
| J3_4V7C_032 | No text annotation | ||
| J3_4V7C_034 | No text annotation | ||
| J3_4V7C_015 | No text annotation | ||
| J3_4V7C_036 | No text annotation | ||
| J3_4V7C_016 | No text annotation | ||
| J3_4V7C_037 | No text annotation | ||
| J3_4V7C_038 | No text annotation | ||
| J4_4V7C_001 | No text annotation | ||
| J4_4V7C_002 | No text annotation | ||
| J4_4V7C_003 | No text annotation | ||
| J4_4V7C_004 | No text annotation | ||
| J4_4V7C_005 | No text annotation | ||
| J4_4V7C_007 | No text annotation | ||
| J4_4V7C_009 | No text annotation | ||
| J4_4V7C_010 | No text annotation | ||
| J4_4V7C_011 | No text annotation | ||
| J4_4V7C_013 | No text annotation | ||
| J4_4V7C_014 | No text annotation | ||
| J4_4V7C_015 | No text annotation | ||
| J5_4V7C_001 | No text annotation | ||
| J5_4V7C_002 | No text annotation | ||
| J5_4V7C_004 | No text annotation | ||
| J5_4V7C_007 | No text annotation | ||
| J5_4V7C_008 | No text annotation | ||
| J9_4V7C_001 | No text annotation |
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