HL_4V7C_055

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

4V7C|1|BA|A|574

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7C_055 not in the Motif Atlas

Geometric match to HL_5J7L_150

Geometric discrepancy: 0.2143

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V7C|1|BA|U|566
4V7C|1|BA|U|567
4V7C|1|BA|U|568
4V7C|1|BA|U|569
4V7C|1|BA|G|570
4V7C|1|BA|U|571
4V7C|1|BA|A|572
4V7C|1|BA|U|573
4V7C|1|BA|A|574
4V7C|1|BA|A|575

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BN

50S ribosomal protein L15

Chain BS

50S ribosomal protein L20

Chain BT

50S ribosomal protein L21