HL_4V7D_001

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

4V7D|1|AA|C|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7D_001 not in the Motif Atlas

Homologous match to HL_5J7L_134

Geometric discrepancy: 0.1784

The information below is about HL_5J7L_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35677.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7D|1|AA|U|59
4V7D|1|AA|G|60
4V7D|1|AA|C|61
4V7D|1|AA|U|62
4V7D|1|AA|A|63
4V7D|1|AA|A|64
4V7D|1|AA|U|65
4V7D|1|AA|C|66
4V7D|1|AA|U|67
4V7D|1|AA|G|68

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L29

Chain A6

50S ribosomal protein L34

Chain AW

50S ribosomal protein L23