RNA 3D Hub //

4V7D Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V7D_0011/AA/59:68No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_4V7D_0021/AA/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_4V7D_0031/AA/123:128No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_4V7D_0041/AA/137:142No text annotation
homologous
HL_5J7L_137
HL_32392.1
HL_4V7D_0051/AA/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_4V7D_1101/AA/188:208No text annotation
HL_4V7D_0061/AA/194:201No text annotation
geometric
HL_7RQB_006
NA
HL_4V7D_0071/AA/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_4V7D_1111/AA/239:258No text annotation
HL_4V7D_0081/AA/246:252No text annotation
homologous
HL_4WF9_008
HL_37369.2
HL_4V7D_0091/AA/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_4V7D_0101/AA/319:323No text annotation
homologous
HL_7RQB_011
NA
HL_4V7D_0111/AA/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_4V7D_1351/AA/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_4V7D_0131/AA/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_4V7D_0141/AA/462:467GNRA
homologous
HL_4WF9_015
HL_37824.8
HL_4V7D_0151/AA/487:493GNRA
homologous
HL_5J7L_148
HL_37824.8
HL_4V7D_0161/AA/543:550No text annotation
homologous
HL_5J7L_149
HL_09452.1
HL_4V7D_0171/AA/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
HL_28252.9
HL_4V7D_0181/AA/611:617No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_4V7D_0191/AA/629:634GNRA
homologous
HL_5J7L_152
HL_37824.8
HL_4V7D_0201/AA/641:647No text annotation
homologous
HL_5J7L_153
HL_13529.1
HL_4V7D_0211/AA/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
HL_81538.2
HL_4V7D_0221/AA/744:753No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_4V7D_0231/AA/779:785No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_4V7D_0241/AA/826:831No text annotation
homologous
HL_4WF9_025
HL_55195.3
HL_4V7D_1121/AA/880:897No text annotation
HL_4V7D_0251/AA/882:894No text annotation
HL_4V7D_0261/AA/955:962GNRA
homologous
HL_4WF9_027
HL_37824.8
HL_4V7D_0271/AA/978:985No text annotation
homologous
HL_7A0S_027
HL_42998.2
HL_4V7D_0281/AA/1064:1074No text annotation
homologous
HL_5J7L_161
HL_19210.3
HL_4V7D_0291/AA/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.2
HL_4V7D_1361/AA/1168:1181No text annotation
HL_4V7D_0311/AA/1222:1227GNRA
homologous
HL_5J7L_164
HL_37824.8
HL_4V7D_0321/AA/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.9
HL_4V7D_0331/AA/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_4V7D_0341/AA/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.8
HL_4V7D_0351/AA/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_4V7D_1151/AA/1450:1461Other HL
geometric
HL_5J7L_200
HL_08100.1
HL_4V7D_0361/AA/1451:1459Mini UNCG with extended bulge
homologous
HL_5J7L_169
HL_22622.1
HL_4V7D_0371/AA/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_4V7D_0381/AA/1533:1538UNCG
homologous
HL_5J7L_171
HL_34617.5
HL_4V7D_0391/AA/1565:1568Mini UNCG
homologous
HL_5J7L_172
HL_48778.2
HL_4V7D_0401/AA/1612:1619No text annotation
homologous
HL_4WF9_038
HL_89567.2
HL_4V7D_0411/AA/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.8
HL_4V7D_0421/AA/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_4V7D_0431/AA/1727:1733No text annotation
geometric
HL_361D_002
HL_13963.3
HL_4V7D_0441/AA/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_4V7D_0451/AA/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_4V7D_0461/AA/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_4V7D_1171/AA/1864:1878No text annotation
HL_4V7D_0471/AA/1868:1873GNRA variation
homologous
HL_5J7L_180
HL_37824.8
HL_4V7D_0481/AA/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4V7D_1371/AA/1949:1957No text annotation
homologous
HL_4WF9_046
HL_20167.2
HL_4V7D_0501/AA/2027:2036No text annotation
homologous
HL_4WF9_047
HL_61996.3
HL_4V7D_0511/AA/2143:2148No text annotation
homologous
HL_5J7L_184
NA
HL_4V7D_0521/AA/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_4V7D_0531/AA/2248:2256No text annotation
homologous
HL_5J7L_186
HL_85367.2
HL_4V7D_0541/AA/2264:2276No text annotation
homologous
HL_4WF9_050
HL_91939.2
HL_4V7D_0551/AA/2303:2313No text annotation
homologous
HL_7RQB_055
NA
HL_4V7D_1191/AA/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_4V7D_0571/AA/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.8
HL_4V7D_0581/AA/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.8
HL_4V7D_0591/AA/2404:2413No text annotation
geometric
HL_5J7L_192
HL_53454.2
HL_4V7D_0601/AA/2471:2479No text annotation
homologous
HL_4WF9_056
HL_32735.2
HL_4V7D_0611/AA/2528:2535No text annotation
homologous
HL_5J7L_194
HL_31585.4
HL_4V7D_0621/AA/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_4V7D_0631/AA/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_4V7D_0641/AA/2658:2663GNRA
geometric
HL_5B2T_003
HL_37824.8
HL_4V7D_0651/AA/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_4V7D_0661/AA/2745:2759No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_4V7D_0671/AA/2795:2801Other HL
homologous
HL_5J7L_200
HL_08100.1
HL_4V7D_0681/AA/2819:2827No text annotation
geometric
HL_5J7L_201
HL_64690.6
HL_4V7D_0691/AA/2856:2861GNRA
homologous
HL_7A0S_068
HL_37824.8
HL_4V7D_0701/AB/38:44No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_4V7D_0711/AB/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_4V7D_0721/BA/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_4V7D_0731/BA/77:92No text annotation
HL_4V7D_0741/BA/158:163GNRA
homologous
HL_5J7L_003
HL_37824.8
HL_4V7D_0751/BA/186:191GNRA
homologous
HL_5J7L_004
HL_37824.8
HL_4V7D_1261/BA/203:214No text annotation
HL_4V7D_0761/BA/206:213No text annotation
geometric
HL_5TBW_012
NA
HL_4V7D_0771/BA/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_4V7D_0781/BA/296:301GNRA
homologous
HL_5J7L_007
HL_37824.8
HL_4V7D_0791/BA/320:333No text annotation
homologous
HL_5J7L_008
HL_81205.3
HL_4V7D_0801/BA/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_4V7D_0811/BA/379:384GNRA
homologous
HL_5J7L_010
HL_37824.8
HL_4V7D_0821/BA/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_4V7D_1381/BA/462:470GNRA related
homologous
HL_5J7L_012
HL_81538.2
HL_4V7D_1301/BA/507:524No text annotation
HL_4V7D_0841/BA/521:528GNRA with near cWW
geometric
HL_6CZR_215
NA
HL_4V7D_0851/BA/617:623No text annotation
homologous
HL_5J7L_014
HL_10453.3
HL_4V7D_0861/BA/689:698No text annotation
homologous
HL_6CZR_086
NA
HL_4V7D_0871/BA/726:731GNRA
homologous
HL_5J7L_016
HL_37824.8
HL_4V7D_0881/BA/786:796No text annotation
homologous
HL_5J7L_017
HL_75293.5
HL_4V7D_0891/BA/840:846No text annotation
HL_4V7D_0901/BA/862:867GNRA
homologous
HL_5J7L_019
HL_37824.8
HL_4V7D_0911/BA/897:902GNRA
homologous
HL_6CZR_091
NA
HL_4V7D_0921/BA/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_4V7D_0931/BA/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.8
HL_4V7D_0941/BA/1028:1033No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_4V7D_0951/BA/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.8
HL_4V7D_0961/BA/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_4V7D_1321/BA/1129:1143No text annotation
HL_4V7D_0971/BA/1134:1140No text annotation
homologous
HL_6CZR_097
NA
HL_4V7D_0981/BA/1165:1171GNRA
homologous
HL_5J7L_026
HL_93535.1
HL_4V7D_0991/BA/1265:1270GNRA
homologous
HL_5J7L_027
HL_37824.8
HL_4V7D_1001/BA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_4V7D_1331/BA/1356:1366No text annotation
homologous
HL_5J7L_029
HL_06226.4
HL_4V7D_1021/BA/1449:1454UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_4V7D_1031/BA/1515:1520GNRA
homologous
HL_4LFB_032
HL_37824.8
HL_4V7D_1041/BV/13:22No text annotation
homologous
HL_6ORD_035
NA
HL_4V7D_1391/BV/28:42No text annotation
HL_4V7D_1051/BV/31:39tRNA anticodon loop
homologous
HL_4YCO_002
HL_06059.7
HL_4V7D_1061/BV/53:61T-loop with 2 stacked bulged bases
homologous
HL_5WWT_002
HL_28252.9
HL_4V7D_1071/BW/13:22No text annotation
homologous
HL_3KFU_004
NA
HL_4V7D_1081/BW/31:39tRNA anticodon loop
homologous
HL_4V90_033
HL_06059.7
HL_4V7D_1091/BW/53:61T-loop with 2 stacked bulged bases
homologous
HL_4LCK_003
HL_28252.9

Problematic loops

#loop idProblemSequence
HL_4V7D_012No text annotation
HL_4V7D_113No text annotation
HL_4V7D_114No text annotation
HL_4V7D_030No text annotation
HL_4V7D_116No text annotation
HL_4V7D_049No text annotation
HL_4V7D_118No text annotation
HL_4V7D_056No text annotation
HL_4V7D_120GNRA with extra cWW
HL_4V7D_121tRNA anticodon loop
HL_4V7D_122No text annotation
HL_4V7D_123No text annotation
HL_4V7D_124No text annotation
HL_4V7D_125GNRA with near cWW
HL_4V7D_127No text annotation
HL_4V7D_128No text annotation
HL_4V7D_129tRNA anticodon loop
HL_4V7D_083No text annotation
HL_4V7D_131No text annotation
HL_4V7D_101No text annotation
HL_4V7D_134No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V7D_0011/AA/24:30,
1/AA/510:516		Triple sheared with non-canonical cWW
homologous
IL_4WF9_001
IL_04021.2
IL_4V7D_0021/AA/36:37,
1/AA/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_4V7D_2501/AA/43:44,
1/AA/434:436		Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_4V7D_0051/AA/81:85,
1/AA/97:105		No text annotation
homologous
IL_5J7L_248
IL_37015.1
IL_4V7D_0061/AA/183:184,
1/AA/212:214		Single stack bend
homologous
IL_5J7L_249
IL_90729.1
IL_4V7D_0071/AA/188:194,
1/AA/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_250
IL_04346.10
IL_4V7D_0081/AA/239:245,
1/AA/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_4V7D_0101/AA/274:281,
1/AA/359:363		No text annotation
geometric
IL_5J7L_253
IL_77870.1
IL_4V7D_0121/AA/293:295,
1/AA/343:347		No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_4V7D_0131/AA/481:484,
1/AA/496:509		No text annotation
homologous
IL_5J7L_255
IL_81516.2
IL_4V7D_0141/AA/536:539,
1/AA/554:557		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_4V7D_0151/AA/564:566,
1/AA/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
IL_07785.1
IL_4V7D_0171/AA/606:610,
1/AA/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_4V7D_0181/AA/672:674,
1/AA/806:808		Isolated non-canonical cWW pair
geometric
IL_5J7L_259
IL_87907.2
IL_4V7D_0191/AA/674:678,
1/AA/799:806		tHW-tHW cross-strand stack
homologous
IL_5J7L_260
IL_54041.2
IL_4V7D_0201/AA/697:698,
1/AA/763:765		Single bulged A
homologous
IL_7RQB_019
NA
IL_4V7D_0211/AA/702:703,
1/AA/728:730		Single bulged G
homologous
IL_4WF9_023
IL_00225.14
IL_4V7D_0221/AA/703:707,
1/AA/724:728		Triple sheared
geometric
IL_4V9F_027
IL_50730.2
IL_4V7D_0231/AA/738:740,
1/AA/757:758		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_4V7D_0241/AA/775:777,
1/AA/787:791		Multiple bulged bases
geometric
IL_4V9F_030
IL_57881.1
IL_4V7D_0251/AA/844:847,
1/AA/933:934		Other IL
geometric
IL_5J7L_267
IL_90729.1
IL_4V7D_2051/AA/844:848,
1/AA/930:934		No text annotation
geometric
IL_5J7L_399
IL_96236.1
IL_4V7D_0261/AA/847:848,
1/AA/930:933		Stack outside cWW
homologous
IL_5J7L_268
IL_56987.1
IL_4V7D_0271/AA/850:851,
1/AA/926:928		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_4V7D_0281/AA/856:862,
1/AA/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
IL_29198.2
IL_4V7D_2511/AA/856:863,
1/AA/913:921		No text annotation
IL_4V7D_0291/AA/862:863,
1/AA/913:915		Single bulged G
geometric
IL_5J7L_271
IL_00225.14
IL_4V7D_0301/AA/863:868,
1/AA/909:913		No text annotation
geometric
IL_5TBW_062
NA
IL_4V7D_2521/AA/864:872,
1/AA/905:912		No text annotation
IL_4V7D_0311/AA/870:872,
1/AA/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_4V7D_2531/AA/875:879,
1/AA/898:902		Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_4V7D_0331/AA/880:882,
1/AA/894:897		Isolated non-canonical cWW pair
geometric
IL_3TD0_005
IL_57744.1
IL_4V7D_0341/AA/994:996,
1/AA/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_4V7D_0351/AA/998:1002,
1/AA/1153:1157		UAA/GAN
homologous
IL_5J7L_277
IL_38507.2
IL_4V7D_0361/AA/1004:1011,
1/AA/1150:1151		SSU/LSU pseudoknot
geometric
IL_5J7L_278
IL_41203.4
IL_4V7D_2091/AA/1004:1013,
1/AA/1149:1151		Isolated non-canonical cWW pair
geometric
IL_5TBW_127
NA
IL_4V7D_0371/AA/1011:1013,
1/AA/1149:1150		Single bulged U
homologous
IL_5J7L_279
IL_89505.4
IL_4V7D_0381/AA/1017:1024,
1/AA/1140:1145		No text annotation
IL_4V7D_2101/AA/1018:1030,
1/AA/1124:1144		No text annotation
IL_4V7D_0391/AA/1024:1030,
1/AA/1124:1140		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_4V7D_0401/AA/1031:1034,
1/AA/1121:1123		Isolated non-canonical cWW pair
homologous
IL_4WF9_041
IL_57744.1
IL_4V7D_0411/AA/1038:1041,
1/AA/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_4V7D_0421/AA/1059:1062,
1/AA/1076:1079		No text annotation
homologous
IL_5J7L_285
IL_92446.2
IL_4V7D_0431/AA/1087:1091,
1/AA/1100:1102		No text annotation
homologous
IL_7RQB_044
NA
IL_4V7D_0441/AA/1196:1199,
1/AA/1246:1250		Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
IL_85033.2
IL_4V7D_0451/AA/1202:1206,
1/AA/1240:1243		No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_4V7D_0461/AA/1208:1215,
1/AA/1234:1238		Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_4V7D_0471/AA/1262:1269,
1/AA/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_4V7D_0481/AA/1310:1313,
1/AA/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_4V7D_2541/AA/1319:1323,
1/AA/1331:1333		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_4V7D_0501/AA/1351:1355,
1/AA/1376:1380		UAA/GAN
geometric
IL_7A0S_048
IL_89021.2
IL_4V7D_0521/AA/1357:1361,
1/AA/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_4V7D_0551/AA/1414:1417,
1/AA/1581:1588		No text annotation
IL_4V7D_2131/AA/1414:1421,
1/AA/1577:1588		No text annotation
IL_4V7D_0561/AA/1417:1421,
1/AA/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_4V7D_2551/AA/1432:1435,
1/AA/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_4V7D_0581/AA/1437:1440,
1/AA/1551:1555		tSH-tHW
homologous
IL_5J7L_297
IL_99646.2
IL_4V7D_0601/AA/1450:1451,
1/AA/1459:1461		Single bulged U
geometric
IL_5J7L_298
IL_89505.4
IL_4V7D_0611/AA/1468:1471,
1/AA/1520:1524		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_4V7D_2561/AA/1474:1478,
1/AA/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_4V7D_2571/AA/1481:1482,
1/AA/1507:1510		180 degree turn
homologous
IL_5J7L_301
IL_00881.1
IL_4V7D_0641/AA/1489:1491,
1/AA/1499:1500		Single bulged A
homologous
IL_5J7L_302
IL_31462.7
IL_4V7D_0651/AA/1651:1656,
1/AA/2004:2006		No text annotation
homologous
IL_7RQB_064
NA
IL_4V7D_0661/AA/1663:1665,
1/AA/1995:1997		Isolated tWW turn
homologous
IL_7A0S_060
IL_67095.2
IL_4V7D_0671/AA/1666:1669,
1/AA/1993:1994		Major groove platform; stack outside cWW
homologous
IL_4WF9_064
IL_50694.7
IL_4V7D_0681/AA/1686:1691,
1/AA/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_4V7D_0691/AA/1712:1718,
1/AA/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_4V7D_0701/AA/1720:1724,
1/AA/1736:1740		Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_4V7D_0711/AA/1770:1771,
1/AA/1980:1982		Single bulged A
homologous
IL_4WF9_068
IL_31462.7
IL_4V7D_0721/AA/1798:1804,
1/AA/1813:1821		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_4V7D_0731/AA/1837:1840,
1/AA/1902:1903		Minor groove platform, major groove intercalation
geometric
IL_5J7L_314
IL_95583.2
IL_4V7D_2581/AA/1841:1842,
1/AA/1898:1901		Major groove intercalation
homologous
IL_4WF9_071
IL_82107.5
IL_4V7D_2591/AA/1846:1849,
1/AA/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_4WF9_072
IL_68140.4
IL_4V7D_2191/AA/1851:1860,
1/AA/1882:1891		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_4V7D_0771/AA/1864:1867,
1/AA/1874:1878		UAA/GAN variation
homologous
IL_5J7L_317
IL_77691.5
IL_4V7D_0781/AA/1933:1934,
1/AA/1964:1967		Bulged stacked bases
geometric
IL_7RQB_076
NA
IL_4V7D_0791/AA/1934:1945,
1/AA/1961:1964		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_4V7D_0811/AA/2050:2052,
1/AA/2617:2618		Major groove platform
homologous
IL_5J7L_320
IL_48076.6
IL_4V7D_0821/AA/2054:2056,
1/AA/2612:2615		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_4V7D_0841/AA/2067:2069,
1/AA/2442:2443		Single bulged U
geometric
IL_4V9F_074
IL_89505.4
IL_4V7D_2601/AA/2070:2071,
1/AA/2438:2441		Minor groove platform
homologous
IL_5J7L_324
IL_51454.3
IL_4V7D_0871/AA/2081:2083,
1/AA/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_4V7D_0881/AA/2085:2087,
1/AA/2232:2234		Isolated non-canonical cWW pair
homologous
IL_7A0S_078
IL_28037.2
IL_4V7D_2611/AA/2103:2105,
1/AA/2184:2186		No text annotation
IL_4V7D_0911/AA/2107:2110,
1/AA/2179:2182		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_4V7D_2621/AA/2108:2120,
1/AA/2178:2181		No text annotation
IL_4V7D_0921/AA/2110:2120,
1/AA/2178:2179		No text annotation
homologous
IL_3U4M_002
IL_32056.1
IL_4V7D_2631/AA/2123:2128,
1/AA/2160:2175		Kink-turn
homologous
IL_5J7L_390
IL_06029.1
IL_4V7D_0941/AA/2124:2128,
1/AA/2160:2174		No text annotation
IL_4V7D_2641/AA/2129:2137,
1/AA/2154:2159		No text annotation
IL_4V7D_0981/AA/2202:2204,
1/AA/2220:2221		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_4V7D_1001/AA/2350:2353,
1/AA/2364:2367		Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_4V7D_1011/AA/2401:2403,
1/AA/2414:2415		No text annotation
IL_4V7D_1021/AA/2453:2454,
1/AA/2498:2500		Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_4V7D_1031/AA/2454:2455,
1/AA/2496:2498		Major groove platform
homologous
IL_4WF9_090
IL_48076.6
IL_4V7D_2651/AA/2457:2461,
1/AA/2489:2494		No text annotation
IL_4V7D_1051/AA/2466:2470,
1/AA/2480:2484		Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_4V7D_1061/AA/2507:2508,
1/AA/2580:2582		Major groove platform
homologous
IL_4WF9_094
IL_07039.3
IL_4V7D_1071/AA/2510:2512,
1/AA/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_4V7D_1081/AA/2512:2513,
1/AA/2571:2574		Multiple bulged bases
geometric
IL_7RQB_098
NA
IL_4V7D_1091/AA/2522:2523,
1/AA/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_4V7D_1111/AA/2591:2592,
1/AA/2601:2603		Single bulged A
homologous
IL_5J7L_344
IL_31462.7
IL_4V7D_1121/AA/2636:2640,
1/AA/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_4V7D_1131/AA/2652:2658,
1/AA/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_5J7L_346
IL_16458.4
IL_4V7D_2661/AA/2680:2684,
1/AA/2725:2727		C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_4V7D_1151/AA/2687:2691,
1/AA/2718:2722		No text annotation
homologous
IL_4WF9_102
IL_23774.1
IL_4V7D_1161/AA/2695:2696,
1/AA/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_4V7D_1171/AA/2737:2742,
1/AA/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_4V7D_2291/AA/2737:2744,
1/AA/2760:2767		No text annotation
IL_4V7D_1191/AA/2806:2811,
1/AA/2889:2892		No text annotation
geometric
IL_5J7L_351
IL_29471.1
IL_4V7D_1211/AA/2838:2839,
1/AA/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_4V7D_1221/AA/2843:2846,
1/AA/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_4V7D_1231/AA/2847:2852,
1/AA/2865:2869		tHS double platform
homologous
IL_5J7L_354
IL_70411.2
IL_4V7D_1241/AB/17:18,
1/AB/65:67		Major groove intercalation
homologous
IL_5J7L_355
IL_31462.7
IL_4V7D_1251/AB/23:28,
1/AB/56:60		No text annotation
homologous
IL_5J7L_356
IL_18472.4
IL_4V7D_2671/AB/30:31,
1/AB/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_4WF9_126
IL_68140.4
IL_4V7D_2681/AB/34:38,
1/AB/44:48		Symmetric double minor groove platform
homologous
IL_5J7L_358
IL_58103.11
IL_4V7D_1281/AB/71:79,
1/AB/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6
IL_4V7D_1301/BA/30:32,
1/BA/552:553		Single bulged G
geometric
IL_5J7L_001
IL_00225.14
IL_4V7D_2321/BA/44:45,
1/BA/396:398		Single bulged A
homologous
IL_5J7L_002
IL_31462.7
IL_4V7D_1321/BA/47:52,
1/BA/359:361		No text annotation
homologous
IL_5J7L_003
IL_14177.2
IL_4V7D_1331/BA/54:56,
1/BA/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_4V7D_1341/BA/63:66,
1/BA/103:104		Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.5
IL_4V7D_1351/BA/67:69,
1/BA/99:102		Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_4V7D_1361/BA/69:73,
1/BA/97:99		No text annotation
geometric
IL_2OEU_001
IL_46387.1
IL_4V7D_2331/BA/69:75,
1/BA/95:99		No text annotation
IL_4V7D_1371/BA/75:76,
1/BA/93:95		Major groove intercalation
geometric
IL_5J7L_352
IL_66635.5
IL_4V7D_2691/BA/128:131,
1/BA/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_4V7D_2701/BA/132:136,
1/BA/227:230		Minor groove platform related
homologous
IL_5J7L_010
IL_64231.5
IL_4V7D_1401/BA/144:146,
1/BA/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.6
IL_4V7D_2711/BA/144:153,
1/BA/168:178		No text annotation
IL_4V7D_1411/BA/147:154,
1/BA/167:175		No text annotation
IL_4V7D_1421/BA/203:206,
1/BA/213:214		No text annotation
IL_4V7D_1431/BA/242:247,
1/BA/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_4V7D_2721/BA/249:252,
1/BA/274:275		No text annotation
homologous
IL_6CZR_405
NA
IL_4V7D_2731/BA/292:293,
1/BA/304:308		C-loop
homologous
IL_5J7L_016
IL_03109.3
IL_4V7D_1461/BA/371:375,
1/BA/389:390		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_4V7D_2381/BA/375:376,
1/BA/387:389		Single bulged G
homologous
IL_6CZR_358
NA
IL_4V7D_1481/BA/409:416,
1/BA/427:433		No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_4V7D_1491/BA/446:450,
1/BA/483:488		tSH-tHW-tWW
geometric
IL_5J7L_022
IL_88269.4
IL_4V7D_1501/BA/450:454,
1/BA/479:483		No text annotation
IL_4V7D_2741/BA/450:455,
1/BA/477:483		No text annotation
homologous
IL_5J7L_023
IL_70801.1
IL_4V7D_1511/BA/454:455,
1/BA/477:479		Single stack bend
geometric
IL_5J7L_044
IL_26793.1
IL_4V7D_1531/BA/504:511,
1/BA/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_4V7D_2401/BA/504:505,
1/BA/526:541		No text annotation
IL_4V7D_1541/BA/514:521,
1/BA/528:537		No text annotation
IL_4V7D_1551/BA/580:584,
1/BA/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_4V7D_1561/BA/594:596,
1/BA/644:645		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_4V7D_2751/BA/597:598,
1/BA/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_4V7D_1581/BA/605:612,
1/BA/628:633		No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_4V7D_1591/BA/654:655,
1/BA/751:754		Major groove platform; stack outside cWW
homologous
IL_5J7L_031
IL_50694.7
IL_4V7D_1601/BA/659:660,
1/BA/745:747		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_4V7D_1611/BA/662:666,
1/BA/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_4V7D_2761/BA/673:677,
1/BA/713:717		Triple non-canonical cWW pairs
geometric
IL_5J7L_361
IL_49751.4
IL_4V7D_2771/BA/684:688,
1/BA/699:706		Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_4V7D_1631/BA/774:778,
1/BA/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.2
IL_4V7D_1641/BA/779:783,
1/BA/799:803		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_4V7D_2781/BA/887:894,
1/BA/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_6CZR_364
NA
IL_4V7D_2791/BA/922:923,
1/BA/1393:1395		Single bulged A
homologous
IL_4LFB_035
IL_31462.7
IL_4V7D_1661/BA/925:927,
1/BA/1390:1391		Single bulged G
homologous
IL_4LFB_036
IL_00225.14
IL_4V7D_1681/BA/933:935,
1/BA/1380:1384		Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_4V7D_1691/BA/953:954,
1/BA/1226:1228		Minor groove platform
homologous
IL_5J7L_042
IL_51454.3
IL_4V7D_2441/BA/955:984,
1/BA/1221:1225		No text annotation
IL_4V7D_1711/BA/993:998,
1/BA/1043:1045		No text annotation
IL_4V7D_1721/BA/998:999,
1/BA/1041:1043		Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_4V7D_1741/BA/1048:1050,
1/BA/1208:1209		Single bulged U
homologous
IL_5J7L_046
IL_89505.4
IL_4V7D_2451/BA/1052:1056,
1/BA/1204:1206		Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_4V7D_1761/BA/1057:1058,
1/BA/1199:1203		Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_4V7D_1771/BA/1060:1061,
1/BA/1195:1197		Single bulged A
homologous
IL_5J7L_049
IL_31462.7
IL_4V7D_1781/BA/1061:1063,
1/BA/1193:1195		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
IL_28037.2
IL_4V7D_2801/BA/1124:1128,
1/BA/1144:1149		No text annotation
homologous
IL_5J7L_051
IL_06691.1
IL_4V7D_1821/BA/1129:1132,
1/BA/1142:1143		Minor groove platform
geometric
IL_5J7L_052
IL_15052.4
IL_4V7D_1831/BA/1158:1162,
1/BA/1174:1181		No text annotation
IL_4V7D_1841/BA/1247:1253,
1/BA/1284:1290		No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_4V7D_1851/BA/1255:1258,
1/BA/1277:1282		180 degree turn
homologous
IL_5J7L_055
IL_11344.2
IL_4V7D_1861/BA/1259:1263,
1/BA/1272:1276		Triple sheared
homologous
IL_5J7L_056
IL_17948.2
IL_4V7D_1871/BA/1303:1308,
1/BA/1329:1334		No text annotation
homologous
IL_5J7L_057
IL_85536.2
IL_4V7D_1891/BA/1399:1401,
1/BA/1501:1504		No text annotation
homologous
IL_5J7L_058
IL_61438.4
IL_4V7D_1901/BA/1401:1404,
1/BA/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_4V7D_1911/BA/1405:1407,
1/BA/1494:1496		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_4V7D_1921/BA/1407:1409,
1/BA/1491:1494		Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_4V7D_2811/BA/1412:1414,
1/BA/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_4V7D_2481/BA/1416:1419,
1/BA/1481:1484		Double sheared
homologous
IL_6CZR_169
NA
IL_4V7D_1951/BA/1429:1435,
1/BA/1466:1471		No text annotation
IL_4V7D_1961/BA/1440:1442,
1/BA/1460:1461		Single bulged A
homologous
IL_5J7L_064
IL_31462.7
IL_4V7D_1971/BA/1445:1448,
1/BA/1455:1457		No text annotation
homologous
IL_5J7L_065
IL_31531.3

Problematic loops

#loop idProblemSequence
IL_4V7D_003Isolated non-canonical cWW pair
IL_4V7D_004Minor groove platform with extra cWW
IL_4V7D_009Isolated non-canonical cWW pair
IL_4V7D_203No text annotation
IL_4V7D_011Isolated non-canonical cWW pair
IL_4V7D_016No text annotation
IL_4V7D_204No text annotation
IL_4V7D_206No text annotation
IL_4V7D_207No text annotation
IL_4V7D_208No text annotation
IL_4V7D_032No text annotation
IL_4V7D_211Partly complementary
IL_4V7D_049No text annotation
IL_4V7D_051Isolated non-canonical cWW pair
IL_4V7D_212No text annotation
IL_4V7D_053No text annotation
IL_4V7D_054Isolated non-canonical cWW pair
IL_4V7D_057No text annotation
IL_4V7D_059No text annotation
IL_4V7D_214No text annotation
IL_4V7D_062No text annotation
IL_4V7D_063No text annotation
IL_4V7D_215No text annotation
IL_4V7D_216No text annotation
IL_4V7D_217No text annotation
IL_4V7D_074No text annotation
IL_4V7D_075No text annotation
IL_4V7D_218No text annotation
IL_4V7D_076Isolated non-canonical cWW pair
IL_4V7D_080Isolated non-canonical cWW pair
IL_4V7D_083No text annotation
IL_4V7D_220Tandem non-canonical cWW pairs
IL_4V7D_085Minor groove platform with extra cWW
IL_4V7D_086No text annotation
IL_4V7D_089Tandem non-canonical cWW pairs
IL_4V7D_090No text annotation
IL_4V7D_221No text annotation
IL_4V7D_093No text annotation
IL_4V7D_222No text annotation
IL_4V7D_095No text annotation
IL_4V7D_223No text annotation
IL_4V7D_096Isolated non-canonical cWW pair
IL_4V7D_097Isolated non-canonical cWW pair
IL_4V7D_099No text annotation
IL_4V7D_224No text annotation
IL_4V7D_104No text annotation
IL_4V7D_225No text annotation
IL_4V7D_226Tandem non-canonical cWW pairs
IL_4V7D_227No text annotation
IL_4V7D_228No text annotation
IL_4V7D_110Isolated non-canonical cWW pair
IL_4V7D_114No text annotation
IL_4V7D_118No text annotation
IL_4V7D_120No text annotation
IL_4V7D_230No text annotation
IL_4V7D_126No text annotation
IL_4V7D_127No text annotation
IL_4V7D_231No text annotation
IL_4V7D_129Isolated non-canonical cWW pair
IL_4V7D_131Isolated non-canonical cWW pair
IL_4V7D_138Tandem non-canonical cWW pairs
IL_4V7D_234No text annotation
IL_4V7D_139No text annotation
IL_4V7D_235No text annotation
IL_4V7D_236No text annotation
IL_4V7D_144No text annotation
IL_4V7D_237No text annotation
IL_4V7D_145No text annotation
IL_4V7D_147Single bulged G, near cWW
IL_4V7D_239No text annotation
IL_4V7D_152Tandem non-canonical cWW pairs
IL_4V7D_241Major groove minor groove platform with extra cWW
IL_4V7D_157No text annotation
IL_4V7D_242No text annotation
IL_4V7D_243Partly complementary
IL_4V7D_162No text annotation
IL_4V7D_1659x7 Sarcin-Ricin with inserted C; G-bulge
IL_4V7D_167Isolated non-canonical cWW pair
IL_4V7D_170Isolated non-canonical cWW pair
IL_4V7D_173Isolated non-canonical cWW pair
IL_4V7D_175Tandem non-canonical cWW pairs
IL_4V7D_246No text annotation
IL_4V7D_247Minor groove platform with extra cWW
IL_4V7D_179Isolated non-canonical cWW pair
IL_4V7D_180Isolated non-canonical cWW pair
IL_4V7D_181No text annotation
IL_4V7D_188Isolated non-canonical cWW pair
IL_4V7D_193Tandem non-canonical cWW pairs
IL_4V7D_194No text annotation
IL_4V7D_249No text annotation
IL_4V7D_198No text annotation
IL_4V7D_199No text annotation
IL_4V7D_200Partly complementary
IL_4V7D_201Isolated non-canonical cWW pair
IL_4V7D_202Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V7D_0411/AA/24:31,
1/AA/474:481,
1/AA/509:516		No text annotation
J3_4V7D_0421/AA/24:31,
1/AA/474:484,
1/AA/496:516		No text annotation
J3_4V7D_0191/AA/32:35,
1/AA/445:461,
1/AA/468:473		No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_4V7D_0431/AA/56:57,
1/AA/70:76,
1/AA/110:114		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_4V7D_0021/AA/682:689,
1/AA/773:775,
1/AA/791:795		No text annotation
J3_4V7D_0441/AA/683:689,
1/AA/773:777,
1/AA/787:794		No text annotation
J3_4V7D_0031/AA/698:700,
1/AA/732:736,
1/AA/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_4V7D_0041/AA/1298:1303,
1/AA/1625:1627,
1/AA/1639:1642		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_4V7D_0051/AA/1306:1309,
1/AA/1605:1611,
1/AA/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_71677.1
J3_4V7D_0451/AA/1344:1349,
1/AA/1382:1385,
1/AA/1402:1403		No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_4V7D_0231/AA/1424:1429,
1/AA/1564:1565,
1/AA/1568:1574		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_4V7D_0061/AA/2091:2093,
1/AA/2196:2200,
1/AA/2223:2228		Kink-turn in J3
homologous
J3_5J7L_044
J3_89368.5
J3_4V7D_0251/AA/2282:2284,
1/AA/2384:2395,
1/AA/2421:2427		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_4V7D_0071/AA/2295:2299,
1/AA/2317:2323,
1/AA/2332:2337		No text annotation
J3_4V7D_0461/AA/2517:2520,
1/AA/2545:2547,
1/AA/2561:2567		No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_4V7D_0471/AA/2812:2815,
1/AA/2831:2836,
1/AA/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_4V7D_0101/AB/10:16,
1/AB/68:70,
1/AB/106:110		No text annotation
homologous
J3_5J7L_049
J3_89095.1
J3_4V7D_0481/AB/10:18,
1/AB/65:70,
1/AB/106:110		No text annotation
J3_4V7D_0291/BA/46:47,
1/BA/361:369,
1/BA/392:395		No text annotation
J3_4V7D_0301/BA/46:52,
1/BA/359:369,
1/BA/392:395		No text annotation
J3_4V7D_0311/BA/586:588,
1/BA/651:654,
1/BA/754:755		No text annotation
geometric
J3_5J7L_002
J3_56052.5
J3_4V7D_0491/BA/586:588,
1/BA/651:655,
1/BA/751:755		No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_4V7D_0501/BA/672:673,
1/BA/717:725,
1/BA/732:734		No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_4V7D_0111/BA/826:829,
1/BA/857:861,
1/BA/868:874		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_4V7D_0511/BA/936:939,
1/BA/1344:1350,
1/BA/1372:1379		No text annotation
homologous
J3_5J7L_052
J3_25303.4
J3_4V7D_0121/BA/955:962,
1/BA/973:984,
1/BA/1221:1225		No text annotation
homologous
J3_5J7L_006
J3_83516.4
J3_4V7D_0131/BA/990:993,
1/BA/1045:1047,
1/BA/1210:1215		No text annotation
homologous
J3_5J7L_007
J3_82572.1
J3_4V7D_0521/BA/990:999,
1/BA/1041:1050,
1/BA/1208:1215		No text annotation
J3_4V7D_0141/BA/1002:1006,
1/BA/1023:1028,
1/BA/1033:1038		No text annotation
J3_4V7D_0531/BA/1003:1008,
1/BA/1021:1028,
1/BA/1033:1037		No text annotation
J3_4V7D_0151/BA/1063:1068,
1/BA/1107:1113,
1/BA/1187:1193		No text annotation
geometric
J3_4LFB_007
J3_08394.3
J3_4V7D_0541/BA/1073:1074,
1/BA/1083:1087,
1/BA/1098:1102		No text annotation
homologous
J3_5J7L_009
J3_76043.3
J3_4V7D_0161/BA/1116:1118,
1/BA/1155:1158,
1/BA/1181:1184		No text annotation
homologous
J3_5J7L_010
J3_82365.4
J3_4V7D_0551/BA/1116:1118,
1/BA/1155:1161,
1/BA/1175:1184		No text annotation
homologous
J3_5J7L_054
J3_17791.2
J4_4V7D_0011/AA/268:271,
1/AA/366:375,
1/AA/399:406,
1/AA/421:424		No text annotation
J4_4V7D_0181/AA/297:301,
1/AA/316:319,
1/AA/323:325,
1/AA/337:341		No text annotation
homologous
J4_5J7L_019
J4_71729.5
J4_4V7D_0031/AA/601:604,
1/AA/624:628,
1/AA/635:638,
1/AA/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_4V7D_0191/AA/1270:1276,
1/AA/1294:1295,
1/AA/1645:1648,
1/AA/2009:2010		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_4V7D_0201/AA/1310:1314,
1/AA/1338:1343,
1/AA/1404:1405,
1/AA/1597:1604		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_4V7D_0211/AA/1313:1314,
1/AA/1338:1343,
1/AA/1404:1405,
1/AA/1597:1603		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_4V7D_0221/AA/1444:1445,
1/AA/1466:1467,
1/AA/1525:1529,
1/AA/1542:1547		No text annotation
homologous
J4_7A0S_007
J4_91813.1
J4_4V7D_0081/AA/1772:1776,
1/AA/1788:1792,
1/AA/1827:1830,
1/AA/1975:1979		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_4V7D_0231/AA/1833:1835,
1/AA/1905:1906,
1/AA/1924:1933,
1/AA/1967:1972		No text annotation
homologous
J4_5J7L_026
J4_93343.1
J4_4V7D_0241/AA/2285:2289,
1/AA/2343:2353,
1/AA/2364:2372,
1/AA/2381:2383		No text annotation
J4_4V7D_0251/AA/2643:2646,
1/AA/2674:2676,
1/AA/2731:2735,
1/AA/2769:2771		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J4_4V7D_0261/BA/115:122,
1/BA/239:240,
1/BA/286:289,
1/BA/311:312		No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_4V7D_0271/BA/142:144,
1/BA/178:184,
1/BA/193:198,
1/BA/219:221		No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_4V7D_0281/BA/569:577,
1/BA/764:769,
1/BA/810:821,
1/BA/879:881		No text annotation
J4_4V7D_0291/BA/943:946,
1/BA/1235:1241,
1/BA/1296:1308,
1/BA/1329:1340		No text annotation
J4_4V7D_0301/BV/7:10,
1/BV/25:27,
1/BV/43:49,
1/BV/65:66		tRNA junction
homologous
J4_3TUP_001
J4_70449.29
J4_4V7D_0171/BW/7:10,
1/BW/25:27,
1/BW/43:49,
1/BW/65:66		No text annotation
homologous
J4_4WT8_031
NA
J5_4V7D_0011/AA/531:533,
1/AA/560:564,
1/AA/577:579,
1/AA/1261:1262,
1/AA/2017:2018		No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_4V7D_0021/AA/584:589,
1/AA/668:671,
1/AA/809:812,
1/AA/1195:1196,
1/AA/1250:1256		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_4V7D_0031/AA/1666:1682,
1/AA/1706:1707,
1/AA/1751:1752,
1/AA/1756:1764,
1/AA/1988:1994		No text annotation
J5_4V7D_0041/AA/1669:1682,
1/AA/1706:1707,
1/AA/1751:1752,
1/AA/1756:1764,
1/AA/1988:1993		No text annotation
J5_4V7D_0091/AA/2057:2064,
1/AA/2446:2453,
1/AA/2500:2508,
1/AA/2580:2588,
1/AA/2606:2611		No text annotation
J5_4V7D_0101/AA/2074:2077,
1/AA/2243:2246,
1/AA/2258:2259,
1/AA/2281:2282,
1/AA/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J5_4V7D_0111/BA/36:39,
1/BA/403:406,
1/BA/436:442,
1/BA/492:500,
1/BA/545:548		No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_4V7D_0121/BA/58:61,
1/BA/106:113,
1/BA/314:316,
1/BA/337:339,
1/BA/350:354		No text annotation
homologous
J5_5J7L_003
J5_59910.6
J6_4V7D_0011/AA/2073:2078,
1/AA/2242:2246,
1/AA/2258:2260,
1/AA/2280:2284,
1/AA/2384:2395,
1/AA/2421:2436		No text annotation
J6_4V7D_0021/AA/2074:2077,
1/AA/2243:2246,
1/AA/2258:2259,
1/AA/2281:2284,
1/AA/2384:2395,
1/AA/2421:2435		No text annotation
J7_4V7D_0021/AA/817:822,
1/AA/835:838,
1/AA/940:946,
1/AA/971:976,
1/AA/987:991,
1/AA/1163:1164,
1/AA/1185:1190		No text annotation
J8_4V7D_0021/AA/8:15,
1/AA/525:531,
1/AA/2018:2023,
1/AA/2040:2043,
1/AA/2625:2630,
1/AA/2788:2791,
1/AA/2805:2806,
1/AA/2892:2895		No text annotation
J9_4V7D_0021/AA/45:54,
1/AA/116:121,
1/AA/130:131,
1/AA/148:150,
1/AA/176:183,
1/AA/214:224,
1/AA/231:235,
1/AA/262:266,
1/AA/426:433		No text annotation

Problematic loops

#loop idProblemSequence
J3_4V7D_017No text annotation
J3_4V7D_018No text annotation
J3_4V7D_001No text annotation
J3_4V7D_020No text annotation
J3_4V7D_021No text annotation
J3_4V7D_022No text annotation
J3_4V7D_024No text annotation
J3_4V7D_008No text annotation
J3_4V7D_026No text annotation
J3_4V7D_009No text annotation
J3_4V7D_027No text annotation
J3_4V7D_028No text annotation
J3_4V7D_032No text annotation
J3_4V7D_033No text annotation
J3_4V7D_034No text annotation
J3_4V7D_035No text annotation
J3_4V7D_036No text annotation
J3_4V7D_037No text annotation
J3_4V7D_038No text annotation
J3_4V7D_039No text annotation
J3_4V7D_040No text annotation
J4_4V7D_002No text annotation
J4_4V7D_004No text annotation
J4_4V7D_005No text annotation
J4_4V7D_006No text annotation
J4_4V7D_007No text annotation
J4_4V7D_009No text annotation
J4_4V7D_010No text annotation
J4_4V7D_011No text annotation
J4_4V7D_012No text annotation
J4_4V7D_013No text annotation
J4_4V7D_014No text annotation
J4_4V7D_015No text annotation
J4_4V7D_016No text annotation
J5_4V7D_005No text annotation
J5_4V7D_006No text annotation
J5_4V7D_007No text annotation
J5_4V7D_008No text annotation
J7_4V7D_001No text annotation
J8_4V7D_001No text annotation
J9_4V7D_001No text annotation

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