HL_4V7D_109

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7D_109 not in the Motif Atlas

Homologous match to HL_4LCK_003

Geometric discrepancy: 0.1615

The information below is about HL_4LCK_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V7D|1|BW|G|53
4V7D|1|BW|U|54
4V7D|1|BW|U|55
4V7D|1|BW|C|56
4V7D|1|BW|G|57
4V7D|1|BW|A|58
4V7D|1|BW|U|59
4V7D|1|BW|U|60
4V7D|1|BW|C|61

Current chains

Chain BW

tRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AC

50S ribosomal protein L1