HL_4V7E_003

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_003 not in the Motif Atlas

Geometric match to HL_5TBW_003

Geometric discrepancy: 0.1071

The information below is about HL_5TBW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

4V7E|1|Aa|C|89
4V7E|1|Aa|G|90
4V7E|1|Aa|G|91
4V7E|1|Aa|C|92
4V7E|1|Aa|G|93
4V7E|1|Aa|A|94
4V7E|1|Aa|G|95

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L13E

Chain Ca

60S ribosomal protein L15

Chain Co

60S ribosomal protein L44E